Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq50 190 5e-43 seq1 125 2e-23 seq1327 111 4e-19 >seq50 Length=657131 Score = 190 bits (210), Expect = 5e-43 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || ||||| || |||| |||||||||| ||| ||||| |||||| Sbjct 306607 AGGACCAGGTGAAGCGTAGATTCCTTCTGGATGTTGTAATCGGACAACGTTCTGCCATCT 306666 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || ||||| ||||| ||||| |||||||||||| Sbjct 306667 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCGGGTGGAATCCCTTCCTTGTCT 306726 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || |||||| |||||| || || |||| ||||| || || ||||| ||| Sbjct 306727 TGGATTTTCGCCTTCACGTTTTCGATCGTATCGGAGGGCTCCACCTCCAAAGTGATAGTC 306786 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || |||| ||||| | ||| | |||||||| Sbjct 306787 TTCCCAGTCAGTGTTTTCACGAAGATCTGCATTTT 306821 Score = 161 bits (178), Expect = 2e-34 Identities = 165/213 (77%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||||||| || | |||||||||| ||| ||||| || || Sbjct 306379 AGTACCAAGTGAAGTGTTGATTCTTTCTGAATGTTGTAATCGGACAACGTTCTTCCGTCC 306438 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || ||||| ||||||||||| |||||||||||||||||||| Sbjct 306439 TCCAGTTGCTTTCCTGCAAAAATAAGACGTTGTTGGTCTGGCGGAATACCTTCCTTGTCC 306498 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || |||||| ||||| || || ||||| || | ||||| || ||||| ||||| Sbjct 306499 TGAAT-TTTTGCTTTCACGTTCTCTATCGTGTCCGACGGCTCCACTTCCAACGTTATCGT 306557 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | |||||| Sbjct 306558 CTTCCCGGTCAACGTCTTCACGAAAATTTGCAT 306590 Score = 114 bits (126), Expect = 3e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| | || | ||| || || ||||| || || | ||||| || | || || Sbjct 306141 ACGCAGTCGTAACACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGATAATGT 306200 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || ||||| ||||||||||| | || || || || || ||||| || Sbjct 306201 TCTTCCATCATCCAGTTGCTTTCCAGCGAAGATCAAACGCTGCTGATCAGGTGGAATCCC 306260 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| || || |||||| || | || || || | ||||| |||| Sbjct 306261 TTCTTTGTCTTGTATTTTCGTCTTCACGTTCTCTACCGTATCCGACGGCTCCACCTCTAG 306320 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||||||||| || | ||||| | ||| | |||||| Sbjct 306321 CGTAATCGTCTTGCCAGTTAGGGTTTTCACGAAAATCTGCATT 306363 >seq1 Length=9216672 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || || || || |||||||| || |||| ||||| |||| | |||||| || ||||| Sbjct 4066161 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTTCTGCCGTCTTCC 4066220 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 || || || || |||||||| || | || |||||||| || || || ||||||||||| Sbjct 4066221 AGTTGTTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGA 4066280 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 |||||| ||||||| ||| || ||||| || | || || || | ||||| ||||| Sbjct 4066281 ATCTTTGCCTTCACATTTTCAATAGTGTCGGAAGCCTCAACTTCCAGGGTGATGGTCTTC 4066340 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || | || || | ||| | ||||| Sbjct 4066341 CCTGTGAGGGTCTTGACGAAAATCTGCAT 4066369 >seq1327 Length=948 Score = 111 bits (122), Expect = 4e-19 Identities = 94/116 (81%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 7728 TCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTAT 7787 ||||| ||||||| || || |||||| ||| ||||||||||||| ||||||||||| | Sbjct 832 TCTAGTCCTGGTAAGGTTTTTCGCGTTACATCGAATTAAACCACATGCTCCACCGCTTGT 891 Query 7788 ACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | |||||| || |||||||||| | ||||||| |||| |||||||| || Sbjct 892 ACGAGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGGGCGTACTACTCAGGCGG 947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487470626228