Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq54 120 4e-22 >seq54 Length=544971 Score = 120 bits (132), Expect = 4e-22 Identities = 310/469 (66%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 77379 CCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAA 77438 ||||| || | || || || || || ||||||||||| |||| || || |||||| Sbjct 228364 CCTTCAGTCGCTGCAAGCTCGCAGCTAGCTTCCAATGCAGCGTAGTATATGCATTCGAAT 228305 Query 77439 ATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAG 77498 || |||||||| | ||| || || | |||||| || || || | | || || ||| Sbjct 228304 ATATTCTTATTTAACACTTTGGCATCCACACTATCGAAGGGGTAGCGCATCAGCATGAAG 228245 Query 77499 GCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTA 77558 || || || || || || || || || || || || | ||||| | | ||| | Sbjct 228244 GCGTCGGCCAAACCTTGGACACCTATTCCTATCGGGCGATGTCGCATGTTGCTCTTCCGT 228185 Query 77559 GCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACT 77618 || || |||||||| || | ||| |||| || || ||| ||||||| | || Sbjct 228184 GCCTCAGGAATAGGGTAGTGATTTCTGTCGATGATGCGATTCAGATTTCGTGTCATGACC 228125 Query 77619 TTAACCACGTCCTTTAGTTTAAGAAAATCAAAT--CTTCCATCTATA----ACAAACATG 77672 || ||||| ||| || || | ||| |||| ||| | |||| |||||| || Sbjct 228124 TTTACCACCGACTTCAGCTTCTCATAATTAAATGACTTTCTTCTAGGCTCCACAAACTTG 228065 Query 77673 TTCAAAGCTATA--GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTA 77730 |||| | | || || || ||||| || || || || | | | | | | | Sbjct 228064 GG--AAGCGAAACTGACGCAAGGTTACACACAGCGACTTCGTCTCTGCCAGTAAACTCGA 228007 Query 77731 TTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTT 77790 | ||||| ||||| || | ||||| || || |||||||| | ||||||||||| | Sbjct 228006 CCACTTCGGTGCATAGGTTGCCGCATTTTATCGTCCCCAGATTCTTCTGGTTGCTCTTCT 227947 Query 77791 TATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||||| | ||| || || | ||| ||||||| || ||||| ||||| Sbjct 227946 TATTGCAAGCGTCTTTGTACATCATATACGGAGTGCCTGTTTCTATCTG 227898 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || || ||||||| ||| |||| |||||| ||||| || || | |||||||||||| || Sbjct 190776 ATTTCTGTACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTA 190835 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTG 77839 ||||| | |||||| || | || |||| ||||| || || ||||| Sbjct 190836 TTGCAGGCGTCCTTGTACATCATGTACGGCGTCCCTGTCTCGATCTG 190882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643948223680