Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq54 100 4e-16 >seq54 Length=544971 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||||||||| | | || ||||| || ||| || ||||| |||||||| || || || Sbjct 227649 CCACTCACCGTTATTCTGAACCCTTTCCATGAAAAGATCGGGTATCCAGAGGGCTCCGAA 227590 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 |||||||| | |||||||||||| || || |||| | | || | ||| || | Sbjct 227589 CAGATCTCGAGCTCTACGTTCTTCCTTGCCGTGGCTCTTCCTCATGTCCAAGAAGTCGAA 227530 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 ||| || ||||||| || ||||||||||| |||||| ||| || || ||| || Sbjct 227529 AATGTCGAAATGCCACGGCTCTAGATATATGGCCATACTGCCCCTCCGCTTCCCACCCCC 227470 Query 76759 CTGATCTATATATCTGGCAGTGTTATTA 76786 ||| || | ||| | |||| || |||| Sbjct 227469 CTGGTCCACATACCGAGCAGCGTCATTA 227442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712908894771840