Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq50 145 2e-29 >seq1 Length=9216672 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || |||||||| || || |||||||| || || || || ||| Sbjct 4066366 CAGATTTTCGTCAAGACCCTCACAGGGAAGACCATCACCCTGGAAGTTGAGGCTTCCGAC 4066307 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||||||| ||||| || || ||||| || |||||||| Sbjct 4066306 ACTATTGAAAATGTGAAGGCAAAGATTCAAGACAAGGAGGGGATCCCCCCCGACCAGCAG 4066247 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||||||||| ||||| || ||||| || || ||||| |||| || ||| || Sbjct 4066246 AGGCTCATCTTCGCCGGCAAACAACTGGAAGACGGCAGAACTCTCTCCGACTACAACATC 4066187 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 4066186 CAGAAGGAATCCACCCTTCATCTCGT 4066161 >seq50 Length=657131 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || || ||||| || | || ||||| || ||| Sbjct 306587 CAAATTTTCGTGAAGACGTTGACCGGGAAGACGATAACGTTGGAAGTGGAGCCGTCGGAC 306528 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||||||||| ||||| || || || ||||| ||| Sbjct 306527 ACGATAGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGTATTCCGCCAGACCAACAA 306468 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || ||||| || || || || ||||| || | ||||||| ||| | Sbjct 306467 CGTCTTATTTTTGCAGGAAAGCAACTGGAGGACGGAAGAACGTTGTCCGATTACAACATT 306408 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||||||||| || |||| Sbjct 306407 CAGAAAGAATCAACACTTCA-CTTG 306384 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || ||||||||||| ||||| || || || || || || Sbjct 306131 CAAATTTTTGTGAAAACCCTTACAGGAAAAACCATCACACTAGAAGTAGAGCCGTCTGAT 306072 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || || ||||| || |||||||| |||||||| ||||| || Sbjct 306071 ACGATCGAGAATGTGAAGGCTAAAATTCAAGATAAAGAAGGCATCCCTCCTGACCAACAG 306012 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| || || || | || || ||| | Sbjct 306011 AGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGCAGAACACTATCGGACTACAACATT 305952 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || || ||| | || |||||| Sbjct 305951 CAGAAGGAGTCTACTCTTCATTTGGTGTTGAGA 305919 Score = 125 bits (138), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || || || || || ||||| | |||||||| Sbjct 306821 AAAATGC---AGATCTTCGTGAAAACACTGACTGGGAAGACTATCACTTTGGAGGTGGAG 306765 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || || ||||| ||||| || || || || ||||| ||||| || || || Sbjct 306764 CCCTCCGATACGATCGAAAACGTGAAGGCGAAAATCCAAGACAAGGAAGGGATTCCACCC 306705 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || || || |||||||| || || ||||| |||||||| || || | ||||| Sbjct 306704 GATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCAGAACGTTGTCCGAT 306645 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| |||| || ||||| || || || || || Sbjct 306644 TACAACATCCAGAAGGAATCTACGCTTCACCTGGT 306610 Score = 118 bits (130), Expect = 3e-21 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| || || || || ||||| || || |||||||| || || Sbjct 306359 CAGATTTTCGTGAAAACCCTAACTGGCAAGACGATTACGCTAGAGGTGGAGCCGTCGGAT 306300 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || | |||||||| || || ||| || || ||||||||||| || || || || ||||| Sbjct 306299 ACGGTAGAGAACGTGAAGACGAAA-ATACAAGACAAAGAAGGGATTCCACCTGATCAGCA 306241 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | |||||||| ||||| || || || |||||||| || | | || || ||| | Sbjct 306240 GCGTTTGATCTTCGCTGGAAAGCAACTGGATGATGGAAGAACATTATCTGACTACAACAT 306181 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 306180 TCAGAAGGAATCGACCCTTCA-CTTG 306156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203687059929228