Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1417 188 7e-43 seq2384 145 8e-30 seq2033 122 9e-23 >seq1417 Length=75703 Score = 188 bits (208), Expect = 7e-43 Identities = 571/875 (65%), Gaps = 8/875 (1%) Strand=Plus/Plus Query 16667 CCCATTCTT-TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGA 16725 |||| | || || ||||| || || | ||||| || || || || || |||| | ||| Sbjct 13638 CCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGA 13697 Query 16726 TATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTC 16785 || ||||||| | ||||||||||| | || | ||||||| | || | | Sbjct 13698 AATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCCTAAAGC 13757 Query 16786 GGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCC 16845 | |||||||||||| | |||||| | |||||| |||| | | |||||||| Sbjct 13758 AATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCC 13817 Query 16846 TATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTT 16905 || | || || | |||||| || | ||| || || || | || ||||| Sbjct 13818 AATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACG 13877 Query 16906 AATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 ||| ||| || | | | ||| | | | ||| || || || | | || || Sbjct 13878 AATCATATCTTGAATAAC-TTCTTGTGGTAGCTTATTAACAATGTGAGTATATAACAAAC 13936 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACC 17024 | || ||||| |||||| || || ||||| ||||||||||| ||||||||||| | | Sbjct 13937 AAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGAC 13996 Query 17025 CGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATA 17084 | ||||| | ||||| || | ||| || |||| || |||||||||||| | Sbjct 13997 CAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAAAA 14056 Query 17085 TACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAA 17144 |||| || || | ||| | || | | || || ||| | | | || || || Sbjct 14057 TACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATG---CACTGCTATCAA 14113 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT-TCTATGGCCTTA 17203 |||||||| |||| || ||||||| |||| | || || ||| | ||| || ||| Sbjct 14114 TCCATTTCAAAGCCCAATCAGCTTTTT-TTTTAATCGATTCAAAGTTGTTTATTGCATTA 14172 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 | |||| | | |||||| || | || |||||||||| ||||| | | || | Sbjct 14173 AGTAATATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTC 14232 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 || ||||||||| ||||| || || |||||||| ||||| ||| ||||| | ||| Sbjct 14233 TCACTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATT 14292 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 |||||||| | | |||| || |||||||| || || || || || || Sbjct 14293 TGAACTTCACAGAAAAATCTACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCA 14352 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCC 17443 ||||| || || | || || || |||| |||| || || | ||| || Sbjct 14353 AAAAAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCT 14412 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 ||| ||||| | | ||| | ||||| | ||||||||||| || | |||||| Sbjct 14413 CTTAGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTG 14472 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||| |||| ||||| ||||||||||| ||||| Sbjct 14473 TACATAGTCCAGATATCGTTGTATTGTATCGGGAA 14507 >seq2384 Length=116048 Score = 145 bits (160), Expect = 8e-30 Identities = 581/905 (64%), Gaps = 15/905 (2%) Strand=Plus/Plus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||| || || |||| || || || || |||||||| |||||||| || || || | | Sbjct 41565 AACTCCTGTTTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCAT 41624 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATT-AGTA-GCTGAAAATATTTTAGAGTACCCC 16780 ||||| ||||||| | ||||||||||| | || || | | || |||| | ||| Sbjct 41625 TGATATCATCTCCATCCATTCAAAAGGATTTAATACGCGGTA--TAATTTATCACAACCC 41682 Query 16781 AGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 | | | | | |||||| || ||||| || | |||||| |||| | ||||| Sbjct 41683 AAAGCAACTAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTC 41742 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || ||||| ||| ||||||||||| || | |||| || ||| || ||| ||| Sbjct 41743 ATACCAATAAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCT 41802 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 || |||||| | | | | || | || | ||| | |||| | | Sbjct 41803 TCACGAATAATTTCATAGATTTGATCTTGTGAAAGCTTATTAACTATATGTGAGTATAGT 41862 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 | ||| || ||||| ||| | || || |||| || || ||||| || |||||||| Sbjct 41863 AAACAAGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTG 41922 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | ||| ||||| ||||| || | ||| ||||| ||| || |||||||||| Sbjct 41923 AGCCCTGGCATAAGAGAACGTTTTTTCATCCAGAATATTGCGCAAAAACTCCCAGAAAAG 41982 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || | | || | || | | || || ||| | | || || || Sbjct 41983 AAAATCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTATCGC---TGCTA 42039 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT-ATGGC 17199 ||||||||| |||| || ||||| | || || | | | || | | || || Sbjct 42040 TTTATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGA-TGGAAAGTGTGTGATAGC 42098 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 || ||||| | |||||| || | | | ||||| || ||||| || | || Sbjct 42099 ATTGAATAACATACTTTTTTCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAATA 42158 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||| || | || |||||||||||||||||||| ||||| ||| || || | Sbjct 42159 AGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGG 42218 Query 17320 TATTTGAACTTCCACGTAGAA--TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 ||||||||||| |||| | || || ||||| || || || || || Sbjct 42219 AATTTGAACTTCACAAAAGAACTTAGTA--GCAAGATTCTCCAATACAATCCCATCAGAA 42276 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 || || ||||| || || | || |||||| || | | |||| | ||||| | Sbjct 42277 GCAGCAAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTTTTCC 42336 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 || || ||| |||| | | |||| ||||| | |||||||||||||| | Sbjct 42337 CAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATGT 42396 Query 17498 TTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCTATCTAAG 17557 || ||||||||| ||||||||||| | |||||||| || || | ||| ||| | | || Sbjct 42397 TTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATC--TGTTAG 42454 Query 17558 GATTC 17562 ||||| Sbjct 42455 GATTC 42459 >seq2033 Length=51049 Score = 122 bits (134), Expect = 9e-23 Identities = 199/284 (70%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || || || || ||| ||||||||||||| ||||| ||| || || | ||||||||| Sbjct 8957 TGAATATTTTCTATGACTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTGAACT 8898 Query 17330 TCCACGTAGAA---TCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAA 17386 || || | || | || || ||||| || || || | || ||||| ||| Sbjct 8897 TC-ACAAAAAAATTTAGTA--GCAAGATTCTCTAATACAATCCTATCAGAAGCGGCAAAA 8841 Query 17387 AACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTT 17446 || || || |||| |||||||||||||||||||| |||||| ||| || | Sbjct 8840 AAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGTAAGATTTTCCCAATCTTGC 8781 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 || |||| || | |||| || ||| | |||||||||||||| | ||| |||||| Sbjct 8780 AAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACTAGCTTCATGCTTCTTATAC 8721 Query 17507 ATATTCCAAATATCATTGTATTGTATGGGGAATACAACATATCT 17550 ||| |||| |||||| | |||||| |||| || | ||| |||| Sbjct 8720 ATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAATCT 8677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517528598627040