Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1417 210 2e-49 seq2384 181 1e-40 seq2033 152 5e-32 >seq1417 Length=75703 Score = 210 bits (232), Expect = 2e-49 Identities = 586/888 (66%), Gaps = 12/888 (1%) Strand=Plus/Plus Query 15905 CCCATTCTT-TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGA 15963 |||| | || || |||||||| || | ||||| ||||| || || || |||| | ||| Sbjct 13638 CCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGA 13697 Query 15964 TATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTC 16023 || | ||||| | ||||| ||||| | || | |||| || | || | | Sbjct 13698 AATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCCTAAAGC 13757 Query 16024 CGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAATTC 16082 ||| ||||||||| || | |||||| | ||||||| |||| ||| | |||| |||| Sbjct 13758 AATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGACAT-AAGCCTTGAATTCATTC 13816 Query 16083 CTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTT 16142 | || | | || || | ||||| || | ||| | || ||| || | || ||||| Sbjct 13817 CAATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCAC 13876 Query 16143 TAATGATATCGGTGGCT--CGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200 ||| ||||| || | | | || | | | ||| | ||| || | | | Sbjct 13877 GAATCATATCT-TGAATAACTTCTTGTGGTAGCT-TATTAACAATGTGAGTATATAACAA 13934 Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| || || || ||||| ||||| ||||| ||||||||||| || ||||| || | Sbjct 13935 ACAAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAG 13994 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || ||||| | ||||| || | |||||| |||| | ||| ||| |||||||| Sbjct 13995 ACCAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAA 14054 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 ||||| ||||| | ||| | || | | || || || | ||| ||| | Sbjct 14055 AATACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCACTGCTATCA-- 14112 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTT-TCTATGGCCT 16439 ||||||||| |||| || ||||||| ||| || | || || ||| | ||| || | Sbjct 14113 -ATCCATTTCAAAGCCCAATCAGCTTTTTTTTTAAT-CGATTCAAAGTTGTTTATTGCAT 14170 Query 16440 TAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACA 16499 ||| ||| | | |||||| ||| ||| |||||||||| || || | | | || Sbjct 14171 TAAGTAATATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAG 14230 Query 16500 TTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTA 16559 | || ||||||||| || || || || ||||||||||| || |||||| || | | Sbjct 14231 TCTCACTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGA 14290 Query 16560 TTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAG 16619 |||| ||||| | |||||| || || || || || || || ||| || | Sbjct 14291 TTTGAACTTCACAGAAAAATCTACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTG 14350 Query 16620 CAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAAT 16679 ||||||| || || | | || || |||| |||| ||| || | | | ||||| Sbjct 14351 CAAAAAAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAAT 14410 Query 16680 CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTT 16739 || ||| ||||| | | ||| | ||||||| |||||||| || || | ||||| Sbjct 14411 CTCTTAGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTT 14470 Query 16740 TATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATC 16787 | ||||| |||| ||||| ||||||||||| || || | |||| ||| Sbjct 14471 TGTACATAGTCCAGATATCGTTGTATTGTATCGGGAACATGACGAATC 14518 >seq2384 Length=116048 Score = 181 bits (200), Expect = 1e-40 Identities = 595/909 (65%), Gaps = 23/909 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||| || || |||| || ||||| || |||||||| || ||||| || || || | | Sbjct 41565 AACTCCTGTTTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCAT 41624 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATT-AGTA-GCTGAA-AATATCTTAGAGTACCC 16017 ||||| | ||||| | ||||| ||||| | || || | | ||| | | | | |||| Sbjct 41625 TGATATCATCTCCATCCATTCAAAAGGATTTAATACGCGGTATAATTTATCACA--ACCC 41682 Query 16018 CAGTTCCGTAACTAA---TCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCA 16074 | | |||||| |||||| || ||||| || | ||||||| |||| ||| | Sbjct 41683 AAA----GCAACTAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACAT-AAGCCTTG 41737 Query 16075 A-TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAA 16133 | || || || |||||| ||| |||||||||| ||||| ||||| || || || ||| Sbjct 41738 AGTTCATACCAATAAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAA 41797 Query 16134 CCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAA 16193 ||||| ||| || || | | | || || | ||| || ||| Sbjct 41798 TAGCTTCACGAATAATTTCATAGATTTGATCTTGTGAAAGCTTATTAACTATATGTGAGT 41857 Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 | | || ||| || || || ||| || ||||| |||| || || ||||| ||||||| Sbjct 41858 ATAGTAAACAAGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAA 41917 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | ||||||||| ||||| || | ||||||||| || ||| ||| | Sbjct 41918 ATGTGAGCCCTGGCATAAGAGAACGTTTTTTCATCCAGAATATTGCGCAAAAACTCCCAG 41977 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 ||||||| || || || | || || | || | | || || || | || | Sbjct 41978 AAAAGAAAATCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTATCGCTGC 42037 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT- 16432 |||| ||||||||| |||| || ||||| | ||| || | | | || | | Sbjct 42038 TATTT---ATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGA-TGGAAAGTGTGTG 42093 Query 16433 ATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAA 16492 || || || || || | |||||| |||| || | ||||| || || || || | Sbjct 42094 ATAGCATTGAATAACATACTTTTTTCTTGAACATTAGTGATATATGTGTCGATAAGCATC 42153 Query 16493 CTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCC 16552 || |||| || | || || |||||||||||||||||||| || ||||||| Sbjct 42154 GAATAAGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCC 42213 Query 16553 TCCGCTATTTGTACTTCCACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTC 16611 || | ||||| ||||| || || | | | || || ||||| || || || || Sbjct 42214 TCAGGAATTTGAACTTC-ACAAAAGAACTTAGTAGCAAGATTCTCCAATACAATCCCATC 42272 Query 16612 ACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAAT 16671 | ||||||||||| || || | | |||||| || | | |||| | | ||||| | Sbjct 42273 AGAAGCAGCAAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTT 42332 Query 16672 ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCAC 16731 | |||||| ||| |||| | | |||| ||||| | |||||||| ||||| | Sbjct 42333 TTCCCAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTC 42392 Query 16732 TGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTATC 16791 || |||||||| ||||||||||| | |||||||| ||||| | ||| ||| | Sbjct 42393 ATGTTTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATC--TG 42450 Query 16792 TAAGGATTC 16800 | ||||||| Sbjct 42451 TTAGGATTC 42459 >seq2033 Length=51049 Score = 152 bits (168), Expect = 5e-32 Identities = 206/284 (73%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || || || |||||| |||||||||||||||| || ||||||||| | ||||| ||| Sbjct 8957 TGAATATTTTCTATGACTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTGAACT 8898 Query 16568 TCCACGTAAAA---TCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624 || || |||| | || || || ||||| || || | ||| || |||||| Sbjct 8897 TC-ACAAAAAAATTTAGTA--GCAAGATTCTCTAATACAATCCTATCAGAAGCGGCAAAA 8841 Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTT 16684 || || || || | |||||||||||||||||||| | |||||| | | |||||||| Sbjct 8840 AAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGTAAGATTTTCCCAATCTTGC 8781 Query 16685 AAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATAC 16744 || |||| || | |||| || ||| | |||||||| ||||| | ||| |||||| Sbjct 8780 AAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACTAGCTTCATGCTTCTTATAC 8721 Query 16745 ATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCT 16788 || |||| |||||| | |||||| ||||||| | ||| |||| Sbjct 8720 ATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAATCT 8677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397600036960