Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1842 89.7 4e-13 >seq1842 Length=60065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 352/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Plus Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || ||||||| || || || ||||| | ||||||||||| | || || || | Sbjct 51796 GTGTTTTGGAAAGCAGTGGTTGAAGAACTCTTATGGTTTATTAGAGGAAGCACAAATGCT 51855 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 || ||| | ||||||| | | || || |||||| | | ||| || | || || Sbjct 51856 AATGAATTAAGTGCTAAAGGTGTCCATATCTGGGATGCAAATGGAAGTAGGGATTTCTTA 51915 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 ||| ||||| || | ||| | || || || || || ||||||| ||||| Sbjct 51916 GATAAACTCGGCTTTAATGATAGAGAAGTTGGAGATCTAGGGCCAGTTTACGGTTTCCAA 51975 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT-CAAACTATTTACAGCAAGGAAT 18877 ||||||||||||||||| |||||| | | | | ||| | ||||| | | |||||| | Sbjct 51976 TGGAGACATTTTGGAGCTGAATAT-ACTAATATGAATGCTGACTATACAAACCAAGGAGT 52034 Query 18878 CGATCAGC-TGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGA 18936 ||||||| |||| | ||||| | || |||||| | || || || || || Sbjct 52035 TGATCAGCTTGCAGA-AGTTATTAAACTTATAAAAACAGATCCTGATTCACGTCGTATAG 52093 Query 18937 TTATATCGTCTTGGAATCCAAAGGATATC--CCCTTAATGGTACTACCTCCATGTCACAC 18994 | || |||||||||| || || || || || |||| | ||||| || || Sbjct 52094 TAATGAGTGCTTGGAATCCTAA--ATCTCAACCATTTATGGCTTTGCCTCCTTGCCATGT 52151 Query 18995 GTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGG 19054 | || ||||||| || | ||| || || | ||||| | || |||||||| || Sbjct 52152 TCTTTGCCAGTTTTTTGTAGAAAATGGAAAACTCAACTGCCTTATGTATCAGAGATCAGG 52211 Query 19055 GGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGT 19114 |||||||| | || || || || || |||| | || |||| | || | | || | Sbjct 52212 CGATATGGGTTTAGGCGTTCCTTTTAATGTTGCAAGCTACTCACTATTAACATGCTTAAT 52271 Query 19115 AGCGCATGTTACAGGACTTA-AAACCGGAGATTTAATTCATACAATGGGGGATGCACATA 19173 || || ||| |||||| ||| || || || ||||| || || ||| | ||| Sbjct 52272 TGCTCAAGTT-TGTGACTTACAAAGAGGTGACTTCGTTCATGTTATTGGAGATACTCATG 52330 Query 19174 TTTA 19177 |||| Sbjct 52331 TTTA 52334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399491204386260