Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1993 116 3e-21 seq1753 104 2e-17 seq2223 102 7e-17 seq2191 89.7 4e-13 seq1 87.8 2e-12 seq1260 82.4 7e-11 >seq1993 Length=52953 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||||||||||||| ||||| ||||||||| | ||| Sbjct 24406 GATAAAGAAGGTATCCCTCCAGATCAACAAAGACTTATATTTGCTGGCAAACAATTAGAA 24465 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | || ||||| |||||||| || ||||| |||||||| | || ||| Sbjct 24466 GATGGTAGAACACTTGCTGATTATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTTA 24525 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 24526 AGATTAAGAGGTGG 24539 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| ||||||| || || || || ||||| ||| ||| ||| | | Sbjct 24084 AATGCAAATCTTCGTCAAAACCTTAACAGGAAAGACCATCACCCTCGATGTCGAATCTTC 24143 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | | | ||| |||||| ||||||||||| | ||| ||||| Sbjct 24144 CGACAGCATTGAGAACGTAAAGGCCAAAATTCAAGATAAAGAAGGAATCCCCCCTGATCA 24203 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||| ||||| || || |||||||| |||||| |||| | || |||||||| Sbjct 24204 ACAAAGACTGATCTTCGCTGGTAAACAACTTGAAGATGGTCGAACTCTTGCTGATTACAA 24263 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||| || ||||| | || | ||||||| || || Sbjct 24264 CATTCAAAAAGAATCAACCCTTCATTTAGTCCTCAGATTACGTGGCGG 24311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| |||||||| || ||||| ||||| || ||| | | Sbjct 24540 AATGCAGATTTTTGTCAAGACATTGACTGGAAAAACTATTACTTTGGATGTTGAATCTTC 24599 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || | | | || |||| |||||| ||||||||||| | || ||||| Sbjct 24600 TGATAGTATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAAGGAATCCCTCCTGATCA 24659 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| |||||||| ||||| || ||||| | |||||| | ||| |||| ||||| || Sbjct 24660 ACAGAGACTTATTTTTGCTGGTAAACAGTTAGAAGATGGTAGGACTTTGGCTGATTATAA 24719 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 ||||| || || || || ||||| |||| || |||| |||| || || Sbjct 24720 CATTCAAAAAGAGTCAACACTTCATTTGGTTCTAAGATTGAGAGGTGGCTA 24770 >seq1753 Length=65450 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| ||||||||||||||||||||||| || |||||||| || Sbjct 9994 GATAAAGAAGGTATCCCCCCTGATCAACAAAGACTTATCTTTGCAGGAAAACAACTTGAG 10053 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||| | |||| |||| |||||||| ||||| ||||| || ||| Sbjct 10054 GATGGAAGAACTTTGGCTGATTACAACATTCAAAAGGAGTCAACT 10098 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||||||| ||||| ||||| || ||||| || ||| Sbjct 9766 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATATTTGCTGGAAAACAGCTTGAA 9825 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| |||| ||||| || || || || || || ||| | ||| |||| | Sbjct 9826 GATGGAAGGACTTTGGCTGATTATAACATCCAAAAAGAGTCAACTTTACACTTGGTTCTT 9885 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 9886 AGATTAAGAGGAGG 9899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| ||||||||||| ||||| || || ||||| ||| Sbjct 10222 GATAAAGAAGGAATTCCTCCTGATCAGCAAAGACTTATATTTGCAGGAAAGCAACTTGAA 10281 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| | || ||||| ||||||||||| || || |||||||| Sbjct 10282 GATGGAAGAACCTTAGCTGATTATAATATTCAGAAAGAGTCGACTCTTCA 10331 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | ||| ||| |||||||| |||||||| || || ||| Sbjct 9529 AAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAACAAAGGCTTATCTTCGCTGGAAAA 9588 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTAC 29158 ||| |||||||| | ||| |||| ||||| || || || || || || || Sbjct 9589 CAATTGGAAGATGGTAGGACTTTGGCTGATTATAACATCCAAAAAGAGTCAAC 9641 >seq2223 Length=42303 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||||||| |||||||| || ||||||||||| ||| Sbjct 22444 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATCTTCGCTGGCAAACAACTAGAA 22385 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| |||| || ||||||||||| || || || ||| | ||| |||| Sbjct 22384 GATGGAAGAACCTTGGCTGACTACAATATTCAAAAAGAGTCAACTTTGCACTTGGT 22329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| |||||||||||||| || ||||| || |||||||| ||| Sbjct 21532 GACAAAGAAGGAATTCCCCCTGATCAACAAAGACTCATATTTGCCGGAAAACAACTTGAA 21473 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | ||| | || |||||||| |||||||| || || ||||||||| |||| Sbjct 21472 GATGGGAGAACCTTAGCTGATTACAACATTCAGAAAGAGTCAACTCTTCACTTGGT 21417 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| | || || |||||||| || || ||| || || Sbjct 22309 ATGCAGATCTTCGTCAAAACCCTCACAGGAAAAACCATAACACTTGACGTTGAATCCTCA 22250 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | | |||| ||||| |||||||||||| | || ||||||| Sbjct 22249 GACAGCATTGAAAACGTTAAAGCCAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 22190 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| |||||||| || ||||||||||| |||||| | ||| |||| || ||||| Sbjct 22189 CAAAGGCTTATCTTCGCTGGCAAACAACTAGAAGATGGAAGAACCTTGGCTGACTACAAC 22130 Query 29142 ATTCAGAAGGAATCTAC 29158 ||||| || || || || Sbjct 22129 ATTCAAAAAGAGTCAAC 22113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | ||| ||||| ||||||||||||||||| || || ||||| || Sbjct 21760 GATAAAGAAGGAATTCCCCCTGATCAGCAAAGACTTATCTTTGCAGGAAAGCAACTTGAG 21701 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| | || ||||| |||||||| || || || || | || |||| | Sbjct 21700 GATGGAAGAACTTTAGCTGATTATAATATTCAAAAAGAGTCAACATTGCATTTGGTTCTT 21641 Query 29175 CGATTACGAGGAGG 29188 |||| ||||||| Sbjct 21640 AGATTGAGAGGAGG 21627 >seq2191 Length=126925 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 29035 ATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 29094 || ||||| ||||||| ||||||||||| | ||| ||||| || |||||||| | Sbjct 117716 ATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAGCAGAGACTTATTT 117775 Query 29095 TTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAAT 29154 |||| ||||| ||| | |||||| | ||| | || || || || || ||||| || | Sbjct 117776 TTGCAGGCAAGCAATTAGAAGATGGGAGAACACTTGCAGACTATAACATCCAGAAAGAGT 117835 Query 29155 CTACTCTTCACATGGTGTTACGATTACGAGGAGGGTA 29191 | || || || |||||||| |||| |||| || || Sbjct 117836 CAACACTACATTTGGTGTTAAGATTGAGAGGTGGTTA 117872 >seq1 Length=265894 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | || |||||||| ||||||||||| || || |||||| | ||| Sbjct 160486 GATAAAGAAGGTATCCCTCCTGATCAACAGAGACTTATCTTCGCTGGGAAACAATTAGAA 160545 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 || | ||| | || || ||||| |||||||||||||| || |||||| Sbjct 160546 GACGGAAGAACCCTTGCTGACTACAACATTCAGAAGGAATCCACACTTCAC 160596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| |||| || || || || |||||||| || || ||| | | Sbjct 160621 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGATGTTGAATCATCT 160680 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || | | | || |||| || ||| ||||| ||||| | ||| |||||| Sbjct 160681 GACAGCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCCCCTGATCAA 160740 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || |||||||| ||||| || |||||| |||||||| || ||| | || || || || Sbjct 160741 CAGAGACTTATTTTTGCCGGGAAACAATTGGAAGATGGCAGAACCTTAGCTGACTATAAC 160800 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||||| || || || Sbjct 160801 ATTCAGAAGGAATCAACACTCCA 160823 >seq1260 Length=79673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 29038 TTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 29097 ||||| ||| ||| || |||||||| | || ||||||||||| |||||||||| Sbjct 63015 TTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGATCAACAAAGGCTTATCTTTG 62956 Query 29098 CGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 | ||||| ||| | |||||| | ||| | || |||||||| || || || || || | Sbjct 62955 CAGGCAAGCAATTAGAAGATGGAAGAACCCTTGCTGATTACAACATCCAAAAAGAGTCAA 62896 Query 29158 CTCTTCAC 29165 |||||||| Sbjct 62895 CTCTTCAC 62888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428322280933340