Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 seq1753 95.1 1e-14 >seq1 Length=265894 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || ||||| || | ||| | || || ||||| |||||||||||||| || Sbjct 160847 CCACCACGAAGTCTGAGGACTAAATGGAGTGTTGATTCCTTCTGAATGTTATAGTCAGCT 160788 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | | || |||| ||||| || ||| ||||||||||||| || || ||| Sbjct 160787 AAGGTTCTGCCATCTTCCAATTGTTTCCCGGCAAAAATAAGTCTCTGTTGATCAGGGGGG 160728 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||| ||| || | | | | ||| | || Sbjct 160727 ATTCCTTCCTTATCTTGAATCTTAGCTTTAACATTTTCAATGCTGTCAGATGATTCAACA 160668 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||| || || ||||| || ||||||||||||||||| Sbjct 160667 TCCAAAGTGATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160621 >seq1753 Length=65450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || || | ||||||||| ||||||||||||||||| || || ||| Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | ||||| || ||||| || ||| | |||||||| || || || ||| Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| || || ||| || ||| || | | | | ||||| | ||| Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || || || || || || ||||| ||||| |||||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422245675565648