Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1993 125 6e-24 seq1753 104 2e-17 seq2223 102 7e-17 seq1 91.5 1e-13 seq2191 87.8 1e-12 seq1260 87.8 1e-12 >seq1993 Length=52953 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| |||| ||||| || || || || ||| | || Sbjct 24313 ATGCAAATCTTCGTCAAAACTCTGACAGGCAAGACTATAACTTTAGATGTTGAATCATCA 24372 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || | | | | |||| ||||| |||||||||||| | || ||||||| Sbjct 24373 GATAGTATTGAAAACGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCTCCAGATCAA 24432 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||||||||| ||||| ||||||||||| |||||| | ||| | || ||||| ||| Sbjct 24433 CAAAGACTTATATTTGCTGGCAAACAATTAGAAGATGGTAGAACACTTGCTGATTATAAT 24492 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| |||||||| | || ||| ||||| |||| || Sbjct 24493 ATTCAAAAAGAATCAACTCTTCATTTAGTTTTAAGATTAAGAGGTGG 24539 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| ||||||| || || || || ||||| ||| ||| ||| | | Sbjct 24084 AATGCAAATCTTCGTCAAAACCTTAACAGGAAAGACCATCACCCTCGATGTCGAATCTTC 24143 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | | | ||| |||||| ||||||||||| | ||| ||||| Sbjct 24144 CGACAGCATTGAGAACGTAAAGGCCAAAATTCAAGATAAAGAAGGAATCCCCCCTGATCA 24203 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||||| ||||| || || |||||| | |||||| |||| | || |||||||| Sbjct 24204 ACAAAGACTGATCTTCGCTGGTAAACAACTTGAAGATGGTCGAACTCTTGCTGATTACAA 24263 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||| ||||| || ||||| | || | ||||||| || || Sbjct 24264 CATTCAAAAAGAATCAACCCTTCATTTAGTCCTCAGATTACGTGGCGG 24311 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||||||||| | || |||||||| |||||||| ||||| || ||| Sbjct 24625 AAAATTCAGGATAAAGAAGGAATCCCTCCTGATCAACAGAGACTTATTTTTGCTGGTAAA 24684 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 || || |||||| | ||| |||| ||||| || |||||||| || || || ||||| Sbjct 24685 CAGTTAGAAGATGGTAGGACTTTGGCTGATTATAACATTCAAAAAGAGTCAACACTTCAT 24744 Query 25239 ATGGTGTTACGATTACGAGGAGGGTA 25264 |||| || |||| |||| || || Sbjct 24745 TTGGTTCTAAGATTGAGAGGTGGCTA 24770 >seq1753 Length=65450 Score = 104 bits (114), Expect = 2e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| ||||||||||||||||||||||| || |||||| | || Sbjct 9994 GATAAAGAAGGTATCCCCCCTGATCAACAAAGACTTATCTTTGCAGGAAAACAACTTGAG 10053 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 ||| | |||| |||| |||||||| ||||||||||| || ||| Sbjct 10054 GATGGAAGAACTTTGGCTGATTACAACATTCAAAAGGAGTCAACT 10098 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||||| ||||| ||||| || ||||| | ||| Sbjct 9766 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATATTTGCTGGAAAACAGCTTGAA 9825 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| |||| ||||| || || ||||| || || ||| | ||| |||| | Sbjct 9826 GATGGAAGGACTTTGGCTGATTATAACATCCAAAAAGAGTCAACTTTACACTTGGTTCTT 9885 Query 25248 CGATTACGAGGAGG 25261 ||||| ||||||| Sbjct 9886 AGATTAAGAGGAGG 9899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| |||||||||||| | ||| ||| |||||||| |||||||| || || ||| Sbjct 9529 AAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAACAAAGGCTTATCTTCGCTGGAAAA 9588 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTAC 25231 |||||||||||| | ||| |||| ||||| || || ||||| || || || Sbjct 9589 CAATTGGAAGATGGTAGGACTTTGGCTGATTATAACATCCAAAAAGAGTCAAC 9641 >seq2223 Length=42303 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||||| |||||||| || ||||||||| | ||| Sbjct 22444 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATCTTCGCTGGCAAACAACTAGAA 22385 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | ||| |||| || |||||||||||||| || || ||| | ||| |||| Sbjct 22384 GATGGAAGAACCTTGGCTGACTACAATATTCAAAAAGAGTCAACTTTGCACTTGGT 22329 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||||||| |||||||| || ||||||||| | ||| Sbjct 22216 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATCTTCGCTGGCAAACAACTAGAA 22157 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTAC 25231 ||| | ||| |||| || ||||| |||||||| || || || Sbjct 22156 GATGGAAGAACCTTGGCTGACTACAACATTCAAAAAGAGTCAAC 22113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | ||| |||||||||||||| || ||||| || |||||| | ||| Sbjct 21532 GACAAAGAAGGAATTCCCCCTGATCAACAAAGACTCATATTTGCCGGAAAACAACTTGAA 21473 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | ||| | || |||||||| ||||| || || || ||||||||| |||| Sbjct 21472 GATGGGAGAACCTTAGCTGATTACAACATTCAGAAAGAGTCAACTCTTCACTTGGT 21417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | ||| ||||| ||||||||||||||||| || || ||| | || Sbjct 21760 GATAAAGAAGGAATTCCCCCTGATCAGCAAAGACTTATCTTTGCAGGAAAGCAACTTGAG 21701 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || ||||| ||||||||||| || || || | || |||| | Sbjct 21700 GATGGAAGAACTTTAGCTGATTATAATATTCAAAAAGAGTCAACATTGCATTTGGTTCTT 21641 Query 25248 CGATTACGAGGAGG 25261 |||| ||||||| Sbjct 21640 AGATTGAGAGGAGG 21627 >seq1 Length=265894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||||||| ||||||| | || ||||| ||||| ||| ||| || | | Sbjct 160164 AATGCAAATATTCGTCAAAACCCTTACAGGCAAGACCATCACCCTCGATGTTGAGTCTTC 160223 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || | | | | | ||| || ||| || || |||||| | || |||||| Sbjct 160224 GGACAGCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCAGATCA 160283 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||||||||||| || || || ||||| |||||| | ||| | || || || || Sbjct 160284 GCAAAGACTTATCTTCGCCGGAAAGCAATTAGAAGATGGTAGGACTTTAGCTGACTATAA 160343 Query 25214 TATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||||| || |||||| Sbjct 160344 CATTCAAAAGGAATCAACCCTTCAC 160368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || |||||||| ||||||||||| || || |||||||| ||| Sbjct 160486 GATAAAGAAGGTATCCCTCCTGATCAACAGAGACTTATCTTCGCTGGGAAACAATTAGAA 160545 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 || | ||| | || || ||||| ||||| |||||||| || |||||| Sbjct 160546 GACGGAAGAACCCTTGCTGACTACAACATTCAGAAGGAATCCACACTTCAC 160596 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| |||||||| |||||||| ||||| || |||||||||||| Sbjct 160714 GATAAGGAAGGAATCCCCCCTGATCAACAGAGACTTATTTTTGCCGGGAAACAATTGGAA 160773 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| || ||| | || || || || ||||| |||||||| || || || Sbjct 160774 GATGGCAGAACCTTAGCTGACTATAACATTCAGAAGGAATCAACACTCCA 160823 >seq2191 Length=126925 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || |||||||| | || ||||||||||||||||||||||| ||||| Sbjct 117484 AAAATTCAAGACAAAGAAGGAATTCCTCCTGATCAACAAAGACTTATCTTTGCCGGCAAG 117543 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||| |||||| | ||| | || || ||||| || ||||| || || || |||||| Sbjct 117544 CAATTAGAAGATGGAAGAACCCTTGCTGACTACAACATCCAAAAAGAGTCAACCCTTCAC 117603 Query 25239 ATG 25241 || Sbjct 117604 TTG 117606 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||||||||||||||||||||| ||||| ||||| |||||| | ||| | || || Sbjct 117286 GATCAACAAAGACTTATCTTTGCAGGCAAGCAATTAGAAGATGGAAGAACCCTTGCTGAC 117345 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||||| || ||||| || || || |||||| |||| Sbjct 117346 TACAACATCCAAAAAGAGTCAACCCTTCACTTGGT 117380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 25118 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 25177 ||||||| ||||||||||| | ||| ||||| || |||||||| ||||| ||||| Sbjct 117726 AAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAGCAGAGACTTATTTTTGCAGGCAA 117785 Query 25178 ACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||||| |||||| | ||| | || || || || || || || || || || || || Sbjct 117786 GCAATTAGAAGATGGGAGAACACTTGCAGACTATAACATCCAGAAAGAGTCAACACTACA 117845 Query 25238 CATGGTGTTACGATTACGAGGAGGGTA 25264 |||||||| |||| |||| || || Sbjct 117846 TTTGGTGTTAAGATTGAGAGGTGGTTA 117872 >seq1260 Length=79673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 62998 GACAAAGAAGGCATTCCTCCTGATCAACAAAGGCTTATCTTTGCAGGCAAGCAATTAGAA 62939 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | ||| | || |||||||| || ||||| || || ||||||||| Sbjct 62938 GATGGAAGAACCCTTGCTGATTACAACATCCAAAAAGAGTCAACTCTTCAC 62888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410783642691992