Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq2223 96.9 4e-15 seq1260 95.1 1e-14 seq2191 86.0 6e-12 seq1753 82.4 8e-11 >seq1 Length=265894 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || | | Sbjct 160393 ATGCAGATCTTCGTCAAAACCCTCACTGGCAAGACTATCACCTTAGATGTTGAGTCTTCA 160452 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||||| | ||| | |||| || || | || ||||| || ||||| | || || Sbjct 160453 GACAGCATTGAAAATGTTAAGGCCAAGATCCAAGATAAAGAAGGTATCCCTCCTGATCAA 160512 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| |||| ||| || ||||| | || |||| | ||||| ||||||||| Sbjct 160513 CAGAGACTTATCTTCGCTGGGAAACAATTAGAAGACGGAAGAACCCTTGCTGACTACAAC 160572 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || || |||| Sbjct 160573 ATTCAGAAGGAATCCACACTTCACTTAGT 160601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||||||||| ||||| || || ||||| ||||||||| |||| || || | | Sbjct 160164 AATGCAAATATTCGTCAAAACCCTTACAGGCAAGACCATCACCCTCGATGTTGAGTCTTC 160223 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||||| || |||| | |||| || |||| ||||| || || ||||| | || | Sbjct 160224 GGACAGCATTGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCAGATC 160282 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| |||| |||| ||| || || || | || || | | || | ||||| | Sbjct 160283 AGCAAAGACTTATCTTCGCCGGAAAGCAATTAGAAGATGGTAGGACTTTAGCTGACTATA 160342 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || ||||| | || || || |||| Sbjct 160343 ACATTCAAAAGGAATCAACCCTTCACTTAGT 160373 >seq2223 Length=42303 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || |||||||| || | ||||| ||| || | Sbjct 22309 ATGCAGATCTTCGTCAAAACCCTCACAGGAAAAACCATAACACTTGACGTTGAATCCTCA 22250 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||||| | | ||||| | ||| |||| | | || ||||| || || || | || || Sbjct 22249 GACAGCATTGAAAACGTTAAAGCCAAAA-TCCAAGATAAAGAAGGTATTCCTCCAGATCA 22191 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| |||||||| || || || | | ||| | |||||||| Sbjct 22190 ACAAAGGCTTATCTTCGCTGGCAAACAACTAGAAGATGGAAGAACCTTGGCTGACTACAA 22131 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || || ||| | || |||| |||| Sbjct 22130 CATTCAAAAAGAGTCAACATTGCACTTAGT 22101 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || ||||| | Sbjct 22769 AAACATGCAGATCTTCGTTAAAACACTCACAGGCAAGACAATCACCTTAGATGTCGAGTC 22710 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | | |||| | ||||| | |||||||| || || || | || Sbjct 22709 TTCAGATAGCATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGA 22650 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||| | | |||| || |||||||| || || || | | ||| | ||||| Sbjct 22649 CCAACAAAGGTTAATCTTTGCAGGCAAACAACTTGAAGATGGAAGAACCTTGGCTGACTA 22590 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| || ||| | || |||| Sbjct 22589 CAACATCCAAAAAGAGTCAACTTTGCA 22563 >seq1260 Length=79673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| ||||| ||||| ||||| || || ||| | || || || | Sbjct 63095 AAACATGCAAATCTTCGTTAAAACACTCACAGGCAAGACAATAACCCTAGATGTTGAGTC 63036 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | || ||| | | ||||| | |||| ||| |||| |||||||| ||||| || | | Sbjct 63035 ATCTGATAGCATCGAAAACGTT-AAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTG 62977 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||| | || |||| || ||||| || | || || | | ||||| || | Sbjct 62976 ATCAACAAAGGCTTATCTTTGCAGGCAAGCAATTAGAAGATGGAAGAACCCTTGCTGATT 62917 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||| || ||| | || || || |||| Sbjct 62916 ACAACATCCAAAAAGAGTCAACTCTTCACTTAGT 62883 >seq2191 Length=126925 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || |||||||| || || | || || || | | Sbjct 117643 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAAACAATAACTCTAGATGTAGAGTCTTCA 117702 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || || | ||| | |||| |||||||| || ||||| || || ||| | || ||| Sbjct 117703 GATAGTATTGAAAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAG 117762 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || ||||| || | || || | | | || || ||||| ||| Sbjct 117763 CAGAGACTTATTTTTGCAGGCAAGCAATTAGAAGATGGGAGAACACTTGCAGACTATAAC 117822 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || || ||| | ||||| | ||||| || || Sbjct 117823 ATCCAGAAAGAGTCAACACTACATTTGGTGTTAAGATTGAGAGGTGG 117869 >seq1753 Length=65450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| ||||| ||||| |||||||| ||||| | || || || | Sbjct 9213 AAAAATGCAGATCTTCGTTAAAACACTCACAGGCAAAACAATCACTTTAGATGTAGAGTC 9272 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||||| | | |||| |||| | ||||| | |||||||| || || || | | Sbjct 9273 TTCAGACAGCATAGAGAACG-TCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAG 9331 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || ||| | || || | || ||||| || || || || | | ||| | |||| Sbjct 9332 ATCAACAAAGGCTTATTTTTGCTGGCAAGCAACTTGAAGATGGAAGGACCTTAGCTGACT 9391 Query 40865 ACAACATCCAGAAGGAG 40881 ||||||| || || ||| Sbjct 9392 ACAACATTCAAAAAGAG 9408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202275049280