Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1993 89.7 6e-13 seq2501 82.4 9e-11 >seq1993 Length=52953 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||| ||||||||||| ||||| || | || || || || ||||||||||| Sbjct 24275 TCTTTTTGAATGTTGTAATCAGCAAGAGTTCGACCATCTTCAAGTTGTTTACCAGCGAAG 24216 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || |||| || || || | || | | || ||| | ||| |||| | || | | Sbjct 24215 ATCAGTCTTTGTTGATCAGGGGGGATTC-CTTCTTTATCTTGAATTTTGGCCTTTACGTT 24157 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| ||||| ||||||| |||||||| || || |||| || || || Sbjct 24156 CTCAATGCTGTCGGAAGATTCGACATCGAGGGTGATGGTCTTTCCTGTTAAGGTTTTGAC 24097 Query 43172 AAAGATTTGCATT 43184 |||||||||||| Sbjct 24096 GAAGATTTGCATT 24084 >seq2501 Length=30621 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/97 (79%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 60052 TTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGA 60111 |||| ||||| |||| ||| |||||| |||||| ||||||| ||||||||||| | Sbjct 22548 TTATAAAAAAA---CTCCGAGGCCGGGAATTGAACCCGGGTCTCCTGCGTGACAGGCAGG 22492 Query 60112 CATACTCACCACTATACTACCGAGGAT---TGAATAT 60145 ||||| |||||||||||||| |||| ||||||| Sbjct 22491 AATACTTACCACTATACTACCTCGGATGGATGAATAT 22455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571798815791840