Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1417 297 2e-75 seq2384 235 5e-57 seq2033 141 9e-29 >seq1417 Length=75703 Score = 297 bits (328), Expect = 2e-75 Identities = 626/924 (68%), Gaps = 11/924 (1%) Strand=Plus/Plus Query 15877 TAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAAC 15936 |||||| || ||||||| | ||| || ||||| | || | ||| || | |||||| Sbjct 13580 TAATTACCT--AAAAATCCACATCAAGCCTAAACATCTGTTCATCTTTCTTCGCCATAAC 13637 Query 15937 TGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGA 15996 |||| ||||| ||||| |||||||||||||||||||| || || || | | || Sbjct 13638 CCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGA 13697 Query 15997 AATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTC 16056 ||| | ||||| | |||||||||||| ||| ||| || ||||| || | Sbjct 13698 AATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCCTAAAGC 13757 Query 16057 CAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 | | |||||||||||| | |||||| | ||| || ||| | | |||||||| Sbjct 13758 AATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCC 13817 Query 16117 TATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAAT 16176 || |||| ||| || | ||||| || | ||| | || ||| || ||| |||||| Sbjct 13818 AATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACG 13877 Query 16177 GATTATATCTCTTACTACACTATTTAACGGAGGGT-TTAATAA-GTGTTTAAACATTATA 16234 || |||||| | | || ||| || | || | |||| || ||| || | | | | Sbjct 13878 AATCATATCT-TGAATA-ACTTCTTGTGGTAGCTTATTAACAATGTGAGTATATAACAAA 13935 Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 ||||||||||| ||| || ||||| || ||||| || | || || |||||||| ||| Sbjct 13936 CAAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGA 13995 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| ||| |||||||| | ||| || || | ||| ||||||||||| Sbjct 13996 CCAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAAA 14055 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 |||||||||||||| ||| |||| || | || | | | | | | || || Sbjct 14056 ATACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCA---CTGCTATCA 14112 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 |||||||| |||||||| ||||||| ||||| | | | ||| | |||||||||| Sbjct 14113 ATCCATTTCAAAGCCCAATCAGCTTTTTTTTTAATCGATTCAAAGTTGTTTATTGCATTA 14172 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 | ||| |||||||||| |||| ||||| || || |||| | | ||| | Sbjct 14173 AGTAATATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTC 14232 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || || || || ||||| || || ||||| |||||||| || |||||| | ||| Sbjct 14233 TCACTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATT 14292 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAG-TTTTCGTTAACTATTCCATCGCTAGCTGC 16653 || |||||| || |||| | | ||| ||| ||||| || |||||||| |||||| Sbjct 14293 TGAACTTCACAGAAAAATC-TACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGC 14351 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 |||||| || | | | ||| ||||||| |||| | ||| | | | || ||| || Sbjct 14352 AAAAAAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATC 14411 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | ||||| | ||||| | ||||||| |||||||||| || || |||||| Sbjct 14412 TCTTAGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTT 14471 Query 16774 ATACATTTTCCATATGTCTTCGTA 16797 ||||| |||| || || | ||| Sbjct 14472 GTACATAGTCCAGATATCGTTGTA 14495 >seq2384 Length=116048 Score = 235 bits (260), Expect = 5e-57 Identities = 600/908 (66%), Gaps = 9/908 (1%) Strand=Plus/Plus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 ||||| || | ||| || ||||| | || | ||| || | ||||||| ||||| Sbjct 41518 TAAAATTCCACATCAAGTCTAAACATTTGCTCATCTTTTTTCGCCATAACTCCTGTTTTT 41577 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| ||||| || | |||||||| || ||||| || |||| | ||| || | ||| Sbjct 41578 TGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCATCTCC 41637 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 || | |||||||||||| | | || ||||||| || ||||| | | || | | Sbjct 41638 ATCCATTCAAAAGGATTTAATACGCGGTATAATTTATCACAACCCAAAGCAACTAAAAGT 41697 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 ||||| || ||||| || | ||| || ||| | ||||||| || || | || Sbjct 41698 CTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAATAAGTTCT 41757 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || | |||||||||| ||| | ||| || || | || |||||| || || || Sbjct 41758 ACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAATAATTTCA 41817 Query 16187 CTTACTACA-CTATTTAACGGAGGGT-TTAA-TAAGTGTTTAAACATTATACAAGCAAAA 16243 | | | || | || || | |||| || ||| | | || |||||||||| Sbjct 41818 TAGATTTGATCTTGTGAA---AGCTTATTAACTATATGTGAGTATAGTAAACAAGCAAAA 41874 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 || ||| | ||||| || | |||||| | || || |||||||| || |||||||| Sbjct 41875 TCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCCTGGCATA 41934 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 || |||||||| ||||| ||||| ||| ||| ||||||||||| || ||||| Sbjct 41935 AGAGAACGTTTTTTCATCCAGAATATTGCGCAAAAACTCCCAGAAAAGAAAATCCCTTCT 41994 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423 | || || ||||||| | || | | | |||| | || | ||||||||| Sbjct 41995 ATAGCAGCGTATGCAACGAGTCTTTGGGCAAA---GCTATCGCTGCTATTTATCCATTTC 42051 Query 16424 ttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAA 16483 |||||| | |||||| | ||||| | | || || ||||| ||||| | Sbjct 42052 AAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAAAGTGTGTGATAGCATTGAATAACATA 42111 Query 16484 tttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGA 16543 ||||||||| || ||||| || || || || | ||| |||| |||| Sbjct 42112 CTTTTTTCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAATAAGTTTCACTATGA 42171 Query 16544 ATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA 16603 | ||| ||||| ||||||||||| |||||||| || ||| || | ||||| |||||| Sbjct 42172 ACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTGAACTTCA 42231 Query 16604 GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCA 16663 | | ||| | || | || || || || ||||| ||| |||||||| || Sbjct 42232 CAAAAGAACTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAAGCAGCAAAAAAAGCT 42291 Query 16664 AGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCT 16723 | | | |||||||| | | |||| ||||| | ||||||| ||| ||| || ||| Sbjct 42292 AAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTTTTCCCAATCACGTAAGTCT 42351 Query 16724 TTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTC 16783 | | || || | |||||| ||||||||||| ||| || || |||||||| || Sbjct 42352 TGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATGTTTCTTATACATAGTC 42411 Query 16784 CATATGTC 16791 || || || Sbjct 42412 CAAATATC 42419 >seq2033 Length=51049 Score = 141 bits (156), Expect = 9e-29 Identities = 577/906 (64%), Gaps = 5/906 (1%) Strand=Plus/Minus Query 15887 TAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTT 15946 ||||| || ||||| | ||||| | || | || || | ||||||| |||| Sbjct 9608 TAAAATTCCATATCAATTTTAAACATTTGTTCATCCTTTTTCGCCATAACTCCTGTTTTC 9549 Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||| | ||| | || | ||||||| || ||||| || || || || || | ||| Sbjct 9548 TGACACTCATTCACACGATTTTCAATAAAGTTTGTCTTGTATTGTATTGGTATTATCTCC 9489 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 || | |||||||||||| || || || ||||||| | || || | | || | Sbjct 9488 ATCCATTCAAAAGGATTTAATGCACGGTATAATTTATCATAGCCTAAAGCTATTAAAAGC 9429 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTATTAATTT 16125 ||||| | | ||| || | || || ||| || || ||||||| || || | || Sbjct 9428 CTATCAGAAATAAACTCAAGGTATTGAGACAT-AAGTCTTGAGTTCATACCAATAATTTC 9370 Query 16126 AACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATC 16185 ||| || | | |||| | | ||| | ||||| || | | |||||| |||| || Sbjct 9369 AACTGGAAGAGTTTCTATAATAAATTCCTTTTCAATTTCTATAGCTTCACAAATTAATTC 9310 Query 16186 TCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATC 16245 | | | | | | | | || | || ||| | | | || ||||| |||||| Sbjct 9309 ATTGATTTGATCTTGTGAAAGCTTATTGACTAGATGTGAATATAATAAACAAGAAAAATC 9250 Query 16246 ACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAG 16305 ||| || | || ||| |||||||| | | |||||| |||| || |||||||| || Sbjct 9249 TGTATGAAAACTTTTGTCTCTACTTATGAGTTTATTTGAAGATGTGAGTCCTGGCATAAG 9190 Query 16306 TCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAAC 16365 | |||||||| | ||| || || ||| ||| ||||||||| || || ||||| | Sbjct 9189 TGAACGTTTTTTCACCCAGAAGATGGCGCAAAAACTACCAGAAAAAAAAATTCCTTCTAT 9130 Query 16366 TGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttttt 16425 || ||||||| | | | | | | | | ||| || | |||||| Sbjct 9129 AATAGCGTATGCAACAAGCCTTTGAGCAAAACTGTCGCTGTTATTTAC---CCATTTCAA 9073 Query 16426 agcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtt 16485 |||||| | ||||| | ||||| | | || ||| |||| ||||| | Sbjct 9072 AGCCCAGTCAGCTTTCTTTTTAATTGATGGAAGGTGTATTATATCATTCAATAACATGGT 9013 Query 16486 tttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAAT 16545 |||||||| ||| ||||||||| || || || | ||| | |||||| Sbjct 9012 TTTTTCTTGAGCATCAGTAATATAAGTGTCGATAAGCATGGAATAAGCCCCACTATGAAT 8953 Query 16546 ATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGA 16605 ||| || || |||||||||| |||||||| || ||| || | ||||| |||||| | Sbjct 8952 ATTTTCTATGACTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTGAACTTCACA 8893 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAG 16665 |||| | || | || || || || | ||| ||| |||||||| || | Sbjct 8892 AAAAAATTTAGTAGCAAGATTCTCTAATACAATCCTATCAGAAGCGGCAAAAAAAGCTAA 8833 Query 16666 TATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTT 16725 || | ||||| |||| |||||||||||| | ||| ||| ||| || || |||| Sbjct 8832 AATATTCTTAATGAAATATTTTTCGTTATCAGTAAGATTTTCCCAATCTTGCAAGTCTTG 8773 Query 16726 TGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCA 16785 || || || | | ||| ||||||||||| ||| || ||| |||||||| |||| Sbjct 8772 AGACAAGTCCAATTTTTCAGCAGTCCAAAAACTAGCTTCATGCTTCTTATACATAGTCCA 8713 Query 16786 TATGTC 16791 ||| || Sbjct 8712 TATATC 8707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462496806480800