Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2223 84.2 2e-11 seq1 82.4 6e-11 >seq2223 Length=42303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||| | ||| | |||||||||| || ||| || || ||||||||||| | Sbjct 22539 CCTCCTCTAAGTCTGAGGACCAAGTGCAAAGTTGACTCTTTTTGGATGTTGTAGTCAGCC 22598 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || || |||||||| || || || || |||| |||||||| |||| Sbjct 22599 AAGGTT--CTTCCATCTTCAAGTTGTTTGCCTGCAAAGATTAACCTTTGTTGGTCTGGAG 22656 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| || ||||| ||||| || || | | | ||| || | ||| | Sbjct 22657 GAATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATGCTATCTGAAGACTCGA 22716 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || | ||| || |||||||| || || || || || ||||| |||||||| Sbjct 22717 CATCTAAGGTGATTGTCTTGCCTGTGAGTGTTTTAACGAAGATCTGCATGTT 22768 >seq1 Length=265894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GT 45167 |||||| | | ||| | || ||||| || || ||||| |||||||| ||||| | Sbjct 160392 GCCACCGCGGAGTCTGAGGACTAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCAGC 160333 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | | | | | | || || | ||| ||||||||||| || | | || || || |||| Sbjct 160332 TAAAGTC-CTACCATCTTCTAATTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGAG 160274 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||||||| ||| || ||| || | | | ||||||| | ||| | Sbjct 160273 GGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGCTGTCCGAAGACTCAA 160214 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | || | ||| || |||||||| || || || || || || |||||||| Sbjct 160213 CATCGAGGGTGATGGTCTTGCCTGTAAGGGTTTTGACGAATATTTGCAT 160165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062546235188