Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1417 286 3e-72 seq2384 260 1e-64 seq2033 152 5e-32 seq2148 89.7 5e-13 >seq1417 Length=75703 Score = 286 bits (316), Expect = 3e-72 Identities = 636/942 (68%), Gaps = 17/942 (2%) Strand=Plus/Plus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914 ||||||||| ||||| | | ||| | | || ||||| || | ||||| || |||| Sbjct 13587 CTAAAAATCCACATCAAGCCTAAACATCTGTTCATCTTTCTTCGCCATAACCCCAGTTTT 13646 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| ||||| ||||| ||||||||||| || || ||||| | || || || | || Sbjct 13647 CTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGAAATCATCTC 13706 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| | ||||| ||||||| || | | ||| ||||| |||| | | ||||| Sbjct 13707 CATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCCTAAAGCAATAAGTAA 13766 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 |||||||||||| || |||| |||||||||||| | ||||||| || || | || Sbjct 13767 TCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCCAATCAATTC 13826 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || || | | || | ||| |||| ||| || | ||| || || ||| | Sbjct 13827 AACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACGAATCATA-T 13885 Query 14155 CGT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAA 14211 | | ||||| ||| | | | || |||| |||| || | | ||||| ||||| Sbjct 13886 CTTGAATAACTTCTTGTG--GTAGCTTATTAACAATGTGAGTATATAACAAACAAGCAAA 13943 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||| ||| | || ||||||||||| |||||||| || |||||||| | || ||||| Sbjct 13944 ATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGCAT 14003 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG-GAAAAGAATATTCCCT 14330 | | |||||||| | ||| || || | | | || | ||| |||||||| || || | Sbjct 14004 AAGTGAACGTTTTTTCAGCCAGAAAATCGAA-CAAAAGCTCCCAGAAAAGAAAATACCTT 14062 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 ||||||||||| | |||| | || || |||| |||| | | | ||||||| Sbjct 14063 CAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCACTGCTATCA---ATCCATT 14119 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCA--TTGTTTCAATAGCATTAAATAA 14448 | |||||| |||| |||||||||||| | || | |||||| || ||||||| ||| Sbjct 14120 TCAAAGCCCAATCAGCTTTTTTTTTAATCGATTCAAAGTTGTTT--ATTGCATTAAGTAA 14177 Query 14449 -ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14507 ||||| || |||| || | | || || || || || | | ||| | ||| Sbjct 14178 TATGTTTTTT-TCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCAC 14236 Query 14508 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14567 |||||||||||||||||| || ||||| |||||||| || |||||| | ||| | Sbjct 14237 TGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGAA 14296 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | || || ||||||| ||| | |||||| || || |||||| ||||||||||| Sbjct 14297 CTTCACAGAAAAATCTACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAAAA 14356 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTA 14687 | || || | | ||| ||||| | || |||| | | | ||| |||||| || Sbjct 14357 AAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCTTA 14416 Query 14688 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACA 14747 ||| | || | ||| | || || ||||||||||| || || ||||| |||| Sbjct 14417 GATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTGTACA 14476 Query 14748 TTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14789 | ||| || || || ||| ||| || || | || |||| Sbjct 14477 TAGTCCAGATATCGTTGTATTGTATCGGGAACATGACGAATC 14518 >seq2384 Length=116048 Score = 260 bits (288), Expect = 1e-64 Identities = 638/953 (67%), Gaps = 37/953 (4%) Strand=Plus/Plus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTA--TCGTCTTTGTTAGAAATAACGCCCATT 13912 |||||| || ||||| | | ||||||| || ||||| || | ||||| || || Sbjct 41517 CTAAAATTCCACATCAA--GTCTAAACATTTGCTCATCTTTTTTCGCCATAACTCCTGTT 41574 Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||||||| ||||| || | ||||||||| ||||| || ||||||| || |||||| | Sbjct 41575 TTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCATC 41634 Query 13973 TCCATAAAATCAAATGGATTTGTT----GACATAAACACTTTATCACAACCTAGTTCTAA 14028 ||||| | ||||| |||||| | | |||| |||||||||||| | | | Sbjct 41635 TCCATCCATTCAAAAGGATTTAATACGCGGTATAA----TTTATCACAACCCAAAGCAAC 41690 Query 14029 TAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTAT 14088 || | |||||| |||| ||||||| |||||||||||| | | |||||||| || Sbjct 41691 TAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAAT 41750 Query 14089 TAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTAT 14148 |||| ||| |||| | |||| ||||||||| || || | ||| || || Sbjct 41751 AAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAAT 41810 Query 14149 AATAATCGTAATAATTTCAT-TAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACA 14205 ||| || || |||| || | | || |||| || |||| | | |||||| Sbjct 41811 AATT-TCATAG--ATTTGATCTTGTGAAAGCTTATTAACTATATGTGAGTATAGTAAACA 41867 Query 14206 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 14265 |||||||| |||||| || ||||||| ||| || ||||| || |||||||| | || Sbjct 41868 AGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCC 41927 Query 14266 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG-GAAAAGAATA 14324 |||||| | |||||||| | ||| |||||||| || || ||| |||||||| | Sbjct 41928 TGGCATAAGAGAACGTTTTTTCATCCAGAATATTGC-GCAAAAACTCCCAGAAAAGAAAA 41986 Query 14325 TTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA-----CGATGCTTTTTTGTT 14379 | || || | ||||| | || | | || || |||| || |||| ||| Sbjct 41987 TCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTATCGCTGCTATTT---- 42042 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT-TGTTTCAATAG 14438 |||||||| |||||| || | ||| |||||||| | | ||| | | ||| Sbjct 42043 ----ATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAAAGTGTGTGA-TAG 42097 Query 14439 CATTAAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 |||| ||||| || | || |||| | | | | || ||||| || ||||| | | Sbjct 42098 CATTGAATAACATACTTTTT-TCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAA 42156 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14557 || ||||| || | |||||||| ||||||||||| ||||||||| || ||| || Sbjct 42157 TAAGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCA 42216 Query 14558 GACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 | ||| || || | | || | || | ||| || || || |||||| | Sbjct 42217 GGAATTTGAACTTCACAAAAGAACTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAA 42276 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTC 14677 || |||||||| || || | | |||||||||| | || | || | ||||||| | Sbjct 42277 GCAGCAAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTTTTCC 42336 Query 14678 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCT 14737 ||||| ||| || | || | || | || ||| | |||||||||||||| || | Sbjct 42337 CAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATGT 42396 Query 14738 TTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14790 || |||||||| ||| || || ||||| ||| ||||| | |||||||| Sbjct 42397 TTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATCT 42449 >seq2033 Length=51049 Score = 152 bits (168), Expect = 5e-32 Identities = 601/926 (65%), Gaps = 27/926 (3%) Strand=Plus/Minus Query 13878 AAACATTA--TCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTT 13935 ||||||| || || || || | ||||| || |||| ||| | ||| | || | || Sbjct 9588 AAACATTTGTTCATCCTTTTTCGCCATAACTCCTGTTTTCTGACACTCATTCACACGATT 9529 Query 13936 TTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGT 13995 ||||| ||||| || || || | || ||| | ||||| | ||||| |||||| Sbjct 9528 TTCAATAAAGTTTGTCTTGTATTGTATTGGTATTATCTCCATCCATTCAAAAGGATTTAA 9469 Query 13996 TG-AC---ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACT 14051 || || |||| ||||||| | |||| ||| || | ||||| | ||| |||| Sbjct 9468 TGCACGGTATAA----TTTATCATAGCCTAAAGCTATTAAAAGCCTATCAGAAATAAACT 9413 Query 14052 CAATATATTGAGACATTAAATCACAA-TTCATACCTATTAGTTTTACAGGAATTATATTG 14110 ||| ||||||||||| || || | |||||||| || | || || |||| | | Sbjct 9412 CAAGGTATTGAGACAT-AAGTCTTGAGTTCATACCAATAATTTCAACTGGAAGAGTTTCT 9354 Query 14111 GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCAT-T 14169 | | |||||| ||||| || | ||| || || | | || | | |||| || | Sbjct 9353 ATAATAAATTCCTTTTCAATTTCTATAGCTTCACAAATTA-ATTCAT--TGATTTGATCT 9297 Query 14170 AGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 14227 | || |||| ||||||| | | | |||||| | |||||| ||||| | Sbjct 9296 TGTGAAAGCTTATTGACTAGATGTGAATATAATAAACAAGAAAAATCTGTATGAAAACTT 9237 Query 14228 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 14287 | |||||||| || |||| |||||| |||| | ||||||||| | | |||||||| Sbjct 9236 TTGTCTCTACTTATGAGTTTATTTGAAGATGTGAGTCCTGGCATAAGTGAACGTTTTTTC 9177 Query 14288 AACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14346 | ||| || || || || || | || ||||| || ||||| || | ||| | || Sbjct 9176 ACCCAGAAGATGGC-GCAAAAACTACCAGAAAAAAAAATTCCTTCTATAATAGCGTATGC 9118 Query 14347 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGA 14406 | | | || |||| | | || || || |||||| |||||| |||| Sbjct 9117 AACAAGCCTTTGAGCAAAACTGTCGCTGTTATT---TACCCATTTCAAAGCCCAGTCAGC 9061 Query 14407 tttttttttAATAAAATCCAT-TGTTTCAATAGCATTAAATAA-ATGTTCCTTCTCTTTA 14464 ||| |||||||| | | ||| | | || |||| ||||| ||| | || |||| | Sbjct 9060 TTTCTTTTTAATTGATGGAAGGTGTATTA-TATCATTCAATAACATGGTTTTT-TCTTGA 9003 Query 14465 GTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATA 14524 | | | ||| || || || ||||| | | ||| || || || ||||| || Sbjct 9002 GCATCAGTAATATAAGTGTCGATAAGCATGGAATAAGCCCCACTATGAATATTTTCTATG 8943 Query 14525 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTT 14584 |||||||||| ||||||||| || ||| || | ||| || || | ||||| | Sbjct 8942 ACTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATTTGAACTTCACAAAAAAATTTA 8883 Query 14585 TCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14644 || | ||| || || || | |||| ||| |||||||| || || || || ||| Sbjct 8882 GTAGCAAGATTCTCTAATACAATCCTATCAGAAGCGGCAAAAAAAGCTAAAATATTCTTA 8823 Query 14645 ATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCT 14704 || || |||| || | || | || |||| |||||| || || | ||| | || Sbjct 8822 ATGAAATATTTTTCGTTATCAGTAAGATTTTCCCAATCTTGCAAGTCTTGAGACAAGTCC 8763 Query 14705 ACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTA 14764 | || ||| | |||||||||||||| || || |||||||| |||||| || || Sbjct 8762 AATTTTTCAGCAGTCCAAAAACTAGCTTCATGCTTCTTATACATAGTCCATATATCACTA 8703 Query 14765 TATAATATAGGAAAAACTACAAATCT 14790 ||| | | ||||| | |||||||| Sbjct 8702 TATTGTTTGGGAAACATGACAAATCT 8677 >seq2148 Length=45258 Score = 89.7 bits (98), Expect = 5e-13 Identities = 209/309 (68%), Gaps = 10/309 (3%) Strand=Plus/Plus Query 57015 TATGAATTTCGACATTATAGGTATAGATGAAGGCCAATTCTTTAAAGATATTGTATCTTT 57074 |||||||| || ||||||| || |||||||| || || || ||||| | |||| Sbjct 14501 TATGAATTATGATGTTATAGGAATTGATGAAGGACAGTTTTTCTCTGATATAATCGCTTT 14560 Query 57075 TTCTGAAAATATGGCAAATATGGGAAAGATAATTATAATAGC-TGCACTAGATAGCACGT 57133 | | |||| ||||| ||| ||||||| |||||||| || ||| | ||||| | Sbjct 14561 TGCAGAAATGATGGCGAATCATGGAAAGACTATTATAATCGCATGCT-TGGATAGTGATT 14619 Query 57134 TTCAACGAAAAGAATTTAATGATATATTGAAATTAATACCGTTATCTGAAAAAGTAACAA 57193 || |||| || ||| |||||| | | ||| | | ||||||||||||||| Sbjct 14620 TTAGACGAGAACCTTTTGGGAATATATGCCAGGTTATAGCTAAAGCTGAAAAAGTAACAA 14679 Query 57194 AA-TTAAACGCTGTATGTATGGAATGTTATAAAGACGCCGCATTTTCTAA---GAGGATC 57249 || ||| | | ||| | | | || |||||| | |||| || || |||||| Sbjct 14680 AACTTACAAG---TATCTGCC-ATTATTGTAAAGAAGATGCATCTTTTAGTGCGAGGATA 14735 Query 57250 ACTAAAGAAAAGGAAATAGAACTCATCGGGGGTAAGGAAAAATATAAATCTGTTTGTAGG 57309 || ||||||| ||| |||| || || || || || ||||||| ||||||||||| Sbjct 14736 ACAAAAGAAACATCGATAAAACTTATTGGTGGGAAAGATAAATATAGGCCTGTTTGTAGG 14795 Query 57310 AAATGTTAT 57318 | || ||| Sbjct 14796 AGTTGCTAT 14804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482329754947040