Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq2248 96.9 5e-15 seq1842 89.7 7e-13 seq2043 84.2 3e-11 >seq2248 Length=123656 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 73894 TAGAAGAGGGGTGGATTGTTCATAGATATCTTCAAAATGGAGATATACTAGTGCTAAATA 73953 ||||| | |||| | ||| | ||| || | |||||||||| | | | | || | Sbjct 62769 TAGAATATGGGTATAAAGTTGAAAGACATATCACAAATGGAGATTTCGTTATTTTTAACA 62828 Query 73954 GACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTATGGATGTAA 74013 |||||||| ||||||||||| || |||||||| | | ||| |||| || | Sbjct 62829 GACAACCTTCTTTACATAAAATGTCGATGATGGCCCATTCTGTTGTAATTTTGCCTTATT 62888 Query 74014 AAACCTTTAAATTTAATCTTGCATGCACTAAACCATATAATGCAGATTTTGATGGAGATG 74073 || |||| ||| ||| | || || | ||| |||||||| |||||||||||||||| Sbjct 62889 CGACTTTTAGATTGAATTTATCAGTGACAACACCTTATAATGCTGATTTTGATGGAGATG 62948 Query 74074 AAATGAATGCTCATGCGCCTCAATCAGAAGAAAGTAAAGCTGA 74116 |||||||| |||| || ||| ||||| ||||||||| Sbjct 62949 AAATGAATATGCATGTTCCACAAAGCTTAGAAACTAAAGCTGA 62991 >seq1842 Length=60065 Score = 89.7 bits (98), Expect = 7e-13 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 104108 ATGAAGAAAAACAATATTTAAATTTATTAGAAAAAGTTCTTTTTCAAGGCGAAGATCGTG 104167 |||||||| | ||||||||| ||| || || | || | | |||| | | | | | Sbjct 51644 ATGAAGAATATCAATATTTAGCATTAGTAAAAGAGATTATCGATAAAGGGGCAAAAAGGG 51703 Query 104168 ACGATAGAACAGGAATTGGAACTAAAAATGTATTTGG-AGAACAATTAAAATTTAATTTA 104226 | ||||| ||| | | || ||| | ||| || || || | | || | || |||| Sbjct 51704 ATGATAGGACAAAAGTAGGGACTTTTAGTGTTTTCGGGAGGATGAGTAGG-TATAGTTTA 51762 Query 104227 AGAACATCTTTTCCGTTACTAACTACaaaaaaaGTTTTTTGGAAAGGAGTTGTAGAAGAA 104286 | | |||| || || | || |||||| ||| |||||||||| ||| || |||||| Sbjct 51763 TCAGAAACTTTCCCAATATTTACAACAAAATTAGTGTTTTGGAAAGCAGTGGTTGAAGAA 51822 Query 104287 CTCTTATGGTTTATTAGCGGGAGTACAGATGTTTCTGTATTAAATCAAAAAGGAGTTAAA 104346 ||||||||||||||||| || || ||| ||| | || ||||| | ||||| || | Sbjct 51823 CTCTTATGGTTTATTAGAGGAAGCACAAATGCTAATGAATTAAGTGCTAAAGGTGTCCAT 51882 Query 104347 ATTTGGAATAAAAATG 104362 || ||| || ||||| Sbjct 51883 ATCTGGGATGCAAATG 51898 >seq2043 Length=50593 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 188908 CCATGTACAAGCATACAATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCT 188967 |||| | ||| | ||||||| ||||||||||||| | ||||| ||||||||| | || Sbjct 22719 CCATATCCAATTAAACAATCTCTTTCCATTTCTCCTAATCTTAGACCTCCTTCTCTAGCC 22778 Query 188968 CTCCCGTTTAG-TGGTTGCCTAGTAATTGCATGTCGTTTTTGGTTTGTACTTGCTCTTGA 189026 || || || || |||||| || || | | | |||||||| | || ||||||| Sbjct 22779 CTACC-TTCAGTTGGTTGTCTTGTTA----AAGCTGTTTTTGG--TCCTCTAGCTCTTGC 22831 Query 189027 AAATATTTTATCTGATACCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAAGAT 189086 | |||||||| | |||||| || | | | | || ||||| |||||||| |||| || Sbjct 22832 ATGCATTTTATCAGCTACCATATGTTTAAGTTTTTGATAATAAACTGGTCCTGAGAATAT 22891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679792068096960