Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1993 100 2e-16 seq1753 89.7 4e-13 >seq1993 Length=52953 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 || ||||| || || || ||||||||||| || || || || ||| ||||||||||||| Sbjct 24082 ATAATGCAAATCTTCGTCAAAACCTTAACAGGAAAGACCATCACCCTCGATGTCGAATCT 24141 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||||| | || | || |||| |||||| | |||||||| | || ||| Sbjct 24142 TCCGACAGCATTGAGAACGTAAAGGCCAAAATTCAAGATAAAGAAGGAATCCCCCCTGAT 24201 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATT 25006 || ||| | | || | || || |||||||| |||||| || | ||| | |||| Sbjct 24202 CAACAAAGACTGATCTTCGCTGGTAAACAACTTGAAGATGGTCGA--ACTCTTGCTGATT 24259 Query 25007 ACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||| || ||||| | || ||||||||||| | |||| || || ||| Sbjct 24260 ACAACATTCAAAAAGAATCAACCCTTCATTTAGTCCTCAGATTACGTGGCGGT 24312 >seq1753 Length=65450 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||| || || || || ||||| || || | ||||| || || | Sbjct 10129 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAAACTATTACTCTTGATGTGGAGTCATCC 10188 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || ||| | |||| ||| || | ||||| | |||||||| | || ||| ||| Sbjct 10189 GATAGTATTGAAAATGTGAAAGCTAAAATACAAGATAAAGAAGGAATTCCTCCTGATCAG 10248 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | |||| ||| || || ||||| |||||| | || | ||||| | Sbjct 10249 CAAAGACTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACCTTAGCTGATTATAAT 10308 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||||||||| | || ||||||||||| Sbjct 10309 ATTCAGAAAGAGTCGACTCTTCATTTAGT 10337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418290602245760