Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2384 286 3e-72 seq1417 280 1e-70 seq2033 170 2e-37 >seq2384 Length=116048 Score = 286 bits (316), Expect = 3e-72 Identities = 643/954 (67%), Gaps = 39/954 (4%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 |||||| || ||||| | | ||| | | || ||||| || | ||||| || |||| Sbjct 41517 CTAAAATTCCACATCAAGTCTAAACATTTGCTCATCTTTTTTCGCCATAACTCCTGTTTT 41576 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| ||||| || | ||||||||| ||||| || ||||||| || |||||| | || Sbjct 41577 TTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCATCTC 41636 Query 13643 CATAAAATCAAATGGATTTATT----GACATAAACACTTTATCACAACCTAGTTCTAATA 13698 ||| | ||||| ||||||| | | |||| |||||||||||| | | | || Sbjct 41637 CATCCATTCAAAAGGATTTAATACGCGGTATAA----TTTATCACAACCCAAAGCAACTA 41692 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 | ||||||||||| |||||||| |||||||||||| | | |||||||| || | Sbjct 41693 AAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAATAA 41752 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||| ||| |||| | |||| ||||||||| || || | ||| || |||| Sbjct 41753 GTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAATAA 41812 Query 13819 TA--ATTGTAATAATCTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACAC 13874 | || | | |||| | ||| || |||| || |||| | | |||||| Sbjct 41813 TTTCATAGATTTGATCTTGT--GAA--AGCTTATTAACTATATGTGAGTATAGTAAACAA 41868 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 |||||||| |||||| || ||||||| ||| || ||||| || |||||||| | ||| Sbjct 41869 GCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCCT 41928 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | |||||||| | ||| |||||||| ||| ||| |||||||| || Sbjct 41929 GGCATAAGAGAACGTTTTTTCATCCAGAATATTGCGCAAAAACTCCCAGAAAAGAAAATC 41988 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA-----CGATGCTTTTTTGTTCG 14049 || || | ||||| | || | | || || |||| || |||| ||| Sbjct 41989 CCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTATCGCTGCTATTT------ 42042 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT-TGTTTCAATAGCA 14108 |||||||| |||||| || | ||| |||||||| | | ||| | | ||||| Sbjct 42043 --ATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAAAGTGTGTGA-TAGCA 42099 Query 14109 TTAAATAA-ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 || ||||| ||| | || |||| | | | | || ||||| || ||||| | ||| Sbjct 42100 TTGAATAACATACTTTTT-TCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAATA 42158 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||||| || | |||||||| ||||||||||| |||||||| || ||| || | Sbjct 42159 AGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGG 42218 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 ||| ||||| | | || | || | ||| || || || |||||| ||| Sbjct 42219 AATTTGAACTTCACAAAAGAACTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAAGC 42278 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTTT 14344 |||||||| || || | | |||||||||| | || |||||| | | ||||||| Sbjct 42279 AGCAAAAAAAGCTAAGACATACTTAATAAAGTGT--CT-TTCATTATCAGTAAGTTTTTC 42335 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 |||||| ||| || | || | || | || ||| | |||||||||||||| || Sbjct 42336 CCAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATG 42395 Query 14405 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 ||| |||||||| ||| || || ||||| ||| ||||| | |||||||| Sbjct 42396 TTTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATCT 42449 >seq1417 Length=75703 Score = 280 bits (310), Expect = 1e-70 Identities = 633/943 (67%), Gaps = 19/943 (2%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 ||||||||| ||||| | ||| | | || ||||| || | ||||| || |||| Sbjct 13587 CTAAAAATCCACATCAAGCCTAAACATCTGTTCATCTTTCTTCGCCATAACCCCAGTTTT 13646 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| ||||| ||||| ||||||||||| || || ||||| | || || || | || Sbjct 13647 CTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGAAATCATCTC 13706 Query 13643 CATAAAATCAAATGGATTTATTGACA---TAAACACTTTATCACAACCTAGTTCTAATAG 13699 ||| | ||||| |||||| | || || | | ||| ||||| |||| | | || Sbjct 13707 CATCCACTCAAAAGGATTT---GCCACTTTATATATTTTCTCACATCCTAAAGCAATAAG 13763 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||||||||| |||||||| |||| |||||||||||| | ||||||| || || | Sbjct 13764 TAATCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCCAATCAA 13823 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || || | | || | ||| |||| ||| || | ||| || || || Sbjct 13824 TTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACGAATCAT 13883 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCA 13877 | | ||||| || | | | || |||| |||| || | | ||||| ||| Sbjct 13884 ATCTTGAATAACTTCTTGTG--GTAGCTTATTAACAATGTGAGTATATAACAAACAAGCA 13941 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 ||||| ||| | || ||||||||||| |||||||| || |||||||| | || ||| Sbjct 13942 AAATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGC 14001 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || | | |||||||| | ||| || || | | ||| ||| |||||||| || || Sbjct 14002 ATAAGTGAACGTTTTTTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAAAATACCT 14061 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 |||||||||||| | |||| | || || |||| |||| | | | |||||| Sbjct 14062 TCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCACTGCTATCA---ATCCAT 14118 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCA--TTGTTTCAATAGCATTAAATA 14115 || |||||| |||| |||||||||||| | || | |||||| || ||||||| || Sbjct 14119 TTCAAAGCCCAATCAGCTTTTTTTTTAATCGATTCAAAGTTGTTT--ATTGCATTAAGTA 14176 Query 14116 AATAT-TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14174 | ||| | || |||| || | | || || || || || | | ||| | ||| Sbjct 14177 A-TATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCA 14235 Query 14175 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT 14234 |||||||||||||||||| || ||||| |||||||| || |||||| | ||| Sbjct 14236 CTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGA 14295 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 ||||| || ||||||| ||| | |||||| || || |||||| |||||||||| Sbjct 14296 ACTTCACAGAAAAATCTACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAAA 14355 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT 14354 || || || | | ||| ||||| | || |||| | | | ||| |||||| | Sbjct 14356 AAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCTT 14415 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14414 | ||| | || | ||| | || || ||||||||||| || || ||||| ||| Sbjct 14416 AGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTGTAC 14475 Query 14415 ATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14457 || ||| || || || ||| ||| || || | || |||| Sbjct 14476 ATAGTCCAGATATCGTTGTATTGTATCGGGAACATGACGAATC 14518 >seq2033 Length=51049 Score = 170 bits (188), Expect = 2e-37 Identities = 623/957 (65%), Gaps = 29/957 (3%) Strand=Plus/Minus Query 13515 AATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACG 13574 |||| | |||||| || | ||| | | ||| | | || || || || | ||||| Sbjct 9617 AATATTATCTAAAATTCCATATCAATTTTAAACATTTGTTCATCCTTTTTCGCCATAACT 9558 Query 13575 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGAT 13634 || |||| ||| | ||| | || | ||||||| ||||| || || || | || | Sbjct 9557 CCTGTTTTCTGACACTCATTCACACGATTTTCAATAAAGTTTGTCTTGTATTGTATTGGT 9498 Query 13635 ATATTTTCCATAAAATCAAATGGATTTATTG-AC---ATAAACACTTTATCACAACCTAG 13690 || | ||||| | ||||| ||||||| || || |||| ||||||| | |||| Sbjct 9497 ATTATCTCCATCCATTCAAAAGGATTTAATGCACGGTATAA----TTTATCATAGCCTAA 9442 Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCA 13749 ||| || | ||||||| ||||||||||| ||||||||||| || || | |||| Sbjct 9441 AGCTATTAAAAGCCTATCAGAAATAAACTCAAGGTATTGAGACAT-AAGTCTTGAGTTCA 9383 Query 13750 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 13809 |||| || | || || |||| | | | | |||||| ||||| || | ||| | Sbjct 9382 TACCAATAATTTCAACTGGAAGAGTTTCTATAATAAATTCCTTTTCAATTTCTATAGCTT 9323 Query 13810 CTTTTATAA--TAATTGTAATAATCTCATTAGAAGGAGGATATTT--TAGATGTTTAAAA 13865 | || | | |||| | |||| | ||| || |||| ||||||| | | Sbjct 9322 CACAAATTAATTCATTGATTTGATCTTGT--GAA--AGCTTATTGACTAGATGTGAATAT 9267 Query 13866 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 | |||||| | |||||| ||||| | | |||||||| || |||| |||||| || Sbjct 9266 AATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTTATGAGTTTATTTGAAGAT 9207 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC--CCGG 13983 || | ||||||||| | | |||||||| | ||| || || || ||||| || || | Sbjct 9206 GTGAGTCCTGGCATAAGTGAACGTTTTTTCACCCAGAAGATGGC-GCAAAA-ACTACCAG 9149 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTT 14043 |||| || ||||| || | ||| | || | | | || |||| | | | Sbjct 9148 AAAAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGAGCAAAACTGTCGCTGT 9089 Query 14044 TGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT-TGTTTCA 14102 | || || |||||| |||||| |||| ||| |||||||| | | ||| | | Sbjct 9088 TATT---TACCCATTTCAAAGCCCAGTCAGCTTTCTTTTTAATTGATGGAAGGTGTATTA 9032 Query 14103 ATAGCATTAAATAA-ATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAA 14161 || |||| ||||| || | || |||| || | | ||| || || || ||||| | Sbjct 9031 -TATCATTCAATAACATGGTTTTT-TCTTGAGCATCAGTAATATAAGTGTCGATAAGCAT 8974 Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 | ||| || || || ||||| || |||||||||| |||||||| || ||| Sbjct 8973 GGAATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATCCATAAAAAGCTCGAGC 8914 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 || | ||| ||||| | ||||| | || | ||| || || || | ||| Sbjct 8913 CTCAGGAATTTGAACTTCACAAAAAAATTTAGTAGCAAGATTCTCTAATACAATCCTATC 8854 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 | ||| |||||||| || || || || ||||| || |||| || | || | || || Sbjct 8853 AGAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGTAAGATT 8794 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 || |||||| || || | ||| | || | || ||| | |||||||||||||| | Sbjct 8793 TTCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACTAGCTTC 8734 Query 14402 AGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 | || |||||||| |||||| || ||||| | | ||||| | |||||||| Sbjct 8733 ATGCTTCTTATACATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAATCT 8677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479712240935200