Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2384 293 2e-74 seq1417 279 5e-70 seq2033 176 4e-39 seq2148 91.5 1e-13 >seq2384 Length=116048 Score = 293 bits (324), Expect = 2e-74 Identities = 667/983 (68%), Gaps = 43/983 (4%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 |||||| || ||||| | | ||| | | || ||||| || | ||||| || |||| Sbjct 41517 CTAAAATTCCACATCAAGTCTAAACATTTGCTCATCTTTTTTCGCCATAACTCCTGTTTT 41576 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| ||||| || | ||||||||||||||| || ||||||| || |||||| | || Sbjct 41577 TTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCATCTC 41636 Query 13431 CATAAAATCGAATGGATTTGTT----GACATAAACACTTTATCACAACCTAGTTCTAATA 13486 ||| | || || |||||| | | |||| |||||||||||| | | | || Sbjct 41637 CATCCATTCAAAAGGATTTAATACGCGGTATAA----TTTATCACAACCCAAAGCAACTA 41692 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | | ||||||||||| |||||||| |||||||||||| | | |||||||| || | Sbjct 41693 AAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAATAA 41752 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 ||| ||| |||| | |||| ||||||||| || || | ||| || |||| Sbjct 41753 GTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAATAA 41812 Query 13607 TAATCTTAATAATG-TCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACG 13663 | || || || || | ||| || |||| || |||| | | |||||| | Sbjct 41813 TT-TCATAGATTTGATCTTGTGAA--AGCTTATTAACTATATGTGAGTATAGTAAACAAG 41869 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 ||||||| |||||| || ||||||| ||| || ||||| || |||||||| | |||| Sbjct 41870 CAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCCTG 41929 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG-GAAAAGAATATT 13782 |||| | |||||||| | ||| |||||||| || || ||| |||||||| || Sbjct 41930 GCATAAGAGAACGTTTTTTCATCCAGAATATTGC-GCAAAAACTCCCAGAAAAGAAAATC 41988 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA-----CGATGCTTTTTTGTTTG 13837 || || | ||||| | || | |||| || |||| || |||| ||| Sbjct 41989 CCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTATCGCTGCTATTT------ 42042 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT-TGTTTCGATTGCA 13896 |||||||| |||||| || | ||| |||||||| | | ||| | ||| ||| Sbjct 42043 --ATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAAAGTGTGT-GATAGCA 42099 Query 13897 TTGAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 |||||||| || | || |||| | | | | || ||||| || ||||| | ||| Sbjct 42100 TTGAATAACATACTTTTT-TCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAATA 42158 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 ||||| || | ||||| || ||||||||||| ||||||||| || ||| || | Sbjct 42159 AGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGG 42218 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTT-TCATTAACAATACCATCACTAG 14074 ||| || || | | || ||| | |||| || || ||||| |||||| || Sbjct 42219 AATTTGAACTTCACAAAAGAA-CTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAAG 42277 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT---TGAGTTTTT 14131 | |||||||| || || | | |||||||||| | || |||||| | | ||||||| Sbjct 42278 CAGCAAAAAAAGCTAAGACATACTTAATAAAGTGT--CT-TTCATTATCAGTAAGTTTTT 42334 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 |||||| ||| || | || | || | || ||| | |||||||||||||| || Sbjct 42335 CCCAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCAT 42394 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT-TGAA 14250 ||| |||||||| ||| || || ||||| ||| ||||| | |||||||| | | Sbjct 42395 GTTTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATCTGTTAG 42454 Query 14251 GATGTTTCTTTAAGAATTGGCTC 14273 ||| | ||| | || || ||||| Sbjct 42455 GAT-TCTCTCTTAGTATCGGCTC 42476 >seq1417 Length=75703 Score = 279 bits (308), Expect = 5e-70 Identities = 639/944 (68%), Gaps = 21/944 (2%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 ||||||||| ||||| | ||| | | || ||||| || | ||||| || |||| Sbjct 13587 CTAAAAATCCACATCAAGCCTAAACATCTGTTCATCTTTCTTCGCCATAACCCCAGTTTT 13646 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| ||||| ||||| |||||||| || || || ||||| | || || || | || Sbjct 13647 CTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGAAATCATCTC 13706 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA-TA 13489 ||| | || || ||||||| || | | ||| ||||| |||| | ||||| || Sbjct 13707 CATCCACTCAAAAGGATTTGCCACTTTATATATTTTCTCACATCCTAAAGC-AATAAGTA 13765 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||||||| |||||||| |||| |||||||||||| | ||||||| || || | || Sbjct 13766 ATCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCCAATCAATT 13825 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || || | | ||| | ||| |||| ||| || | ||| || || ||| Sbjct 13826 CAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACGAATCATA- 13884 Query 13610 TCTT-AATAATGTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAA 13666 |||| ||||| || | | | || |||| |||| || | | ||||| |||| Sbjct 13885 TCTTGAATAACTTCTTGTG--GTAGCTTATTAACAATGTGAGTATATAACAAACAAGCAA 13942 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13726 |||| ||| | || ||||||||||| |||||||| || |||||||| | || |||| Sbjct 13943 AATCTGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGCA 14002 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATTCCC 13785 | | | |||||||| | ||| || || | | | || | | || |||||||| || || Sbjct 14003 TAAGTGAACGTTTTTTCAGCCAGAAAATCG-AACAAAAGCTCCCAGAAAAGAAAATACCT 14061 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 |||||||||||| | |||| |||| || |||| |||| || | |||||| Sbjct 14062 TCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGC---ACTGCTATCAATCCAT 14118 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCA--TTGTTTCGATTGCATTGAATA 13903 || |||||| |||| |||||||||||| | || | |||||| |||||||| | || Sbjct 14119 TTCAAAGCCCAATCAGCTTTTTTTTTAATCGATTCAAAGTTGTTT--ATTGCATTAAGTA 14176 Query 13904 A-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | ||||| || |||| || | | || || || || || | | ||| | ||| Sbjct 14177 ATATGTT-TTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCA 14235 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 |||||||||||| ||||| || ||||| |||||||| || |||||| | ||| Sbjct 14236 CTGTGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGA 14295 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAA 14081 || || || |||||| | ||| |||| ||||| ||||| |||||| ||||||||| Sbjct 14296 ACTTCACAGAAAAATC-TACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAA 14354 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGC 14141 ||| || || | | ||| ||||| | || |||| | | | ||| |||||| Sbjct 14355 AAAAGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCT 14414 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 || ||| | || | ||| | || || ||||||||||| || || ||||| || Sbjct 14415 TAGATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTGTA 14474 Query 14202 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 ||| ||| || || || ||| ||| || || | || |||| Sbjct 14475 CATAGTCCAGATATCGTTGTATTGTATCGGGAACATGACGAATC 14518 >seq2033 Length=51049 Score = 176 bits (194), Expect = 4e-39 Identities = 625/956 (65%), Gaps = 27/956 (3%) Strand=Plus/Minus Query 13303 AATAAAAACTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACG 13362 |||| | |||||| || | ||| | | ||| | | || || || || | ||||| Sbjct 9617 AATATTATCTAAAATTCCATATCAATTTTAAACATTTGTTCATCCTTTTTCGCCATAACT 9558 Query 13363 CCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGAT 13422 || |||| ||| | ||| | || | ||||||| |||||| || || || | || | Sbjct 9557 CCTGTTTTCTGACACTCATTCACACGATTTTCAATAAAGTTTGTCTTGTATTGTATTGGT 9498 Query 13423 ATATTTTCCATAAAATCGAATGGATTTGTTG-AC---ATAAACACTTTATCACAACCTAG 13478 || | ||||| | || || |||||| || || |||| ||||||| | |||| Sbjct 9497 ATTATCTCCATCCATTCAAAAGGATTTAATGCACGGTATAA----TTTATCATAGCCTAA 9442 Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA-TTCA 13537 ||| ||| | ||||||| ||||||||||| ||||||||||| || || | |||| Sbjct 9441 AGCTATTAAAAGCCTATCAGAAATAAACTCAAGGTATTGAGACAT-AAGTCTTGAGTTCA 9383 Query 13538 TACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCT 13597 |||| || | || || |||| | | | | |||||| ||||| || | ||| | Sbjct 9382 TACCAATAATTTCAACTGGAAGAGTTTCTATAATAAATTCCTTTTCAATTTCTATAGCTT 9323 Query 13598 CGTTTATAATAATC-TTAATAATGTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAA 13654 | || | | || || || || | ||| || |||| ||||||| | | | Sbjct 9322 CACAAATTA-ATTCATTGATTTGATCTTGTGAA--AGCTTATTGACTAGATGTGAATATA 9266 Query 13655 TTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATG 13714 |||||| | |||||| ||||| | | |||||||| || |||| |||||| ||| Sbjct 9265 ATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTTATGAGTTTATTTGAAGATG 9206 Query 13715 TTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAA 13773 | | ||||||||| | | |||||||| | ||| || || || || || | || ||| Sbjct 9205 TGAGTCCTGGCATAAGTGAACGTTTTTTCACCCAGAAGATGGC-GCAAAAACTACCAGAA 9147 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 || || ||||| || | ||| | || | || | || |||| | | || Sbjct 9146 AAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGAGCAAAACTGTCGCTGTTA 9087 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCAT-TGTTTCGAT 13892 ||| | |||||| |||||| |||| ||| |||||||| | | ||| | || Sbjct 9086 TTT---ACCCATTTCAAAGCCCAGTCAGCTTTCTTTTTAATTGATGGAAGGTGTATT-AT 9031 Query 13893 TGCATTGAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 |||| ||||| ||| | || |||| || | | ||| || || || ||||| | | Sbjct 9030 ATCATTCAATAACATGGTTTTT-TCTTGAGCATCAGTAATATAAGTGTCGATAAGCATGG 8972 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 ||| || || || |||||||| |||||||||| ||||||||| || ||| | Sbjct 8971 AATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATCCATAAAAAGCTCGAGCCT 8912 Query 14012 CTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA-ACAATACCATCA 14070 | | ||| || || | ||||| || | |||| || | | ||||| | |||| Sbjct 8911 CAGGAATTTGAACTTCACAAAAAAAT-TTAGTAGCAAGATTCTCTAATACAATCCTATCA 8853 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 ||| |||||||| || || || || ||||| || |||| || | || | || ||| Sbjct 8852 GAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGTAAGATTT 8793 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 | |||||| || || | ||| | || | || ||| | |||||||||||||| || Sbjct 8792 TCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACTAGCTTCA 8733 Query 14191 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14246 || |||||||| |||||| || ||||| | | ||||| | |||||||| Sbjct 8732 TGCTTCTTATACATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAATCT 8677 >seq2148 Length=45258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/306 (68%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 56403 TATGAAATTCGACATTATAGGTATAGATGAAGGGCAATTTTTTAAAGATATTGTACCTTT 56462 |||||| | || ||||||| || |||||||| || ||||| ||||| | |||| Sbjct 14501 TATGAATTATGATGTTATAGGAATTGATGAAGGACAGTTTTTCTCTGATATAATCGCTTT 14560 Query 56463 TTCTGAAAATATGGCAAATATGGGAAAGATAATTATAATAGC-TGCACTAGATAGCACGT 56521 | | |||| ||||| ||| ||||||| |||||||| || ||| | ||||| | Sbjct 14561 TGCAGAAATGATGGCGAATCATGGAAAGACTATTATAATCGCATGCT-TGGATAGTGATT 14619 Query 56522 TTCAACGAAAAGAATTTAATGATATATTGAAATTGATACCGTTATCTGAAAAAGTAACAA 56581 || |||| || ||| |||||| | | ||| | | ||||||||||||||| Sbjct 14620 TTAGACGAGAACCTTTTGGGAATATATGCCAGGTTATAGCTAAAGCTGAAAAAGTAACAA 14679 Query 56582 AA-TTAAACGCTGTATGTATGGAATGTTATAAAGATGCCGCATTTTCTAAGAGGATCACT 56640 || ||| | | | | || | ||| | ||||||| | ||| | |||||| || Sbjct 14680 AACTTACAAG-TATCTGCCATTATTGTAAAGAAGATGCATCTTTTAGTGCGAGGATAACA 14738 Query 56641 AAAGAAAAGGAAATAGAACTCATCGGGGGTAAGGAAAAATATAAATCTGTTTGTAGGAAA 56700 ||||||| ||| |||| || || || || || ||||||| |||||||||||| Sbjct 14739 AAAGAAACATCGATAAAACTTATTGGTGGGAAAGATAAATATAGGCCTGTTTGTAGGAGT 14798 Query 56701 TGTTAT 56706 || ||| Sbjct 14799 TGCTAT 14804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573078357920