Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1753 95.1 9e-15 seq1993 84.2 2e-11 >seq1753 Length=65450 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | || ||||| | ||| ||||||||| | |||||||| | | Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || || | |||||| || ||||| || | || |||||||| | || Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | ||| | || || ||| || Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||||||||| || | |||||| ||||| |||||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | |||||||| | || ||| ||||| | || ||||| | ||| || | Sbjct 9662 AGTCTAAGAACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTA 9603 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| || || || || | | ||||| || | || | ||||||| Sbjct 9602 CCATCTTCCAATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCT 9543 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || || ||||||| | ||| |||| || ||||||||| | ||| Sbjct 9542 TTATCTTGAATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTT 9483 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||||| || || ||||| ||||| || ||||| Sbjct 9482 ATAGTTTTTCCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq1993 Length=52953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||| | ||| || ||||| | ||| ||||| | | ||| | | Sbjct 24528 TCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGCAAGTGTTCTACC 24469 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || ||||||||||| ||||| || | || |||||||| | || | ||||||||| Sbjct 24468 ATCTTCTAATTGTTTGCCAGCAAATATAAGTCTTTGTTGATCTGGAGGGATACCTTCTTT 24409 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| ||||||| | ||| | || | || || |||| ||||| Sbjct 24408 ATCTTGGATTTTAGCTTTGACGTTTTCAATACTATCTGATGATTCAACATCTAAAGTTAT 24349 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || || |||||||| || || |||||||| Sbjct 24348 AGTCTTGCCTGTCAGAGTTTTGACGAAGATTTGCAT 24313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357385208424