Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1260 118 1e-21 seq1993 114 1e-20 seq156 104 2e-17 seq2459 100 3e-16 seq1753 93.3 4e-14 seq1008 93.3 4e-14 seq114 91.5 1e-13 seq125 84.2 2e-11 >seq1260 Length=79673 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | ||| ||||||||||| ||||| ||||| | ||| ||| ||||| Sbjct 62427 ACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAATCAGCAAGTGTTCTCCCATCTTCT 62486 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || || ||| | || || | ||||||||| ||||| |||||||||||||| Sbjct 62487 AATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAGGAGGGATGCCTTCTTTGTCTTGT 62546 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | ||| | |||| | | |||||| || | ||| | || || Sbjct 62547 ATTTTCGCTTTCACATTTTCAATACTGTCTGACGATTCTACATCTAAAGTTATAGTTTTC 62606 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || || || || || ||||||||||||||| || Sbjct 62607 CCAGTTAAAGTCTTGACGAATATTTGCATACCT 62639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| || || |||||||| ||||||||||| | || || ||||| Sbjct 62883 ACTAAGTGAAGAGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTTCTTCCATCTTCT 62942 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || || ||| |||| || | ||| ||||| ||||| |||||||||||||| | Sbjct 62943 AATTGCTTGCCTGCAAAGATAAGCCTTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGA 63002 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || ||| || | | ||| | | || | | || || || | || | |||||| Sbjct 63003 ATCTTTGCCTTAACGTTTTCGATGCTATCAGATGACTCAACATCTAGGGTTATTGTCTTG 63062 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | |||||| ||||| |||||||| Sbjct 63063 CCTGTGAGTGTTTTAACGAAGATTTGCAT 63091 >seq1993 Length=52953 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||||||||||||| || ||||||||||| || || ||||| Sbjct 24539 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGCA 24480 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || || | ||| ||||| ||||| Sbjct 24479 AGTGTTCTACCATCTTCTAATTGTTTGCCAGCAAATATAAGTCTTTGTTGATCTGGAGGG 24420 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | | || | | ||| || Sbjct 24419 ATACCTTCTTTATCTTGGATTTTAGCTTTGACGTTTTCAATACTATCTGATGATTCAACA 24360 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||| |||| ||||| ||||| ||||||||| Sbjct 24359 TCTAAAGTTATAGTCTTGCCTGTCAGAGTTTTGACGAAGATTTGCATA 24312 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || ||||| | | |||||||||| || ||||||||||| ||||||||||| Sbjct 24311 CCGCCACGTAATCTGAGGACTAAATGAAGGGTTGATTCTTTTTGAATGTTGTAATCAGCA 24252 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | || |||| ||||| |||||||||||||| ||||||| | ||| ||||| || | Sbjct 24251 AGAGT--TCGACCATCTTCAAGTTGTTTACCAGCGAAGATCAGTCTTTGTTGATCAGGGG 24194 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || |||||| |||| | || | |||| | | ||| | Sbjct 24193 GGATTCCTTCTTTATCTTGAATTTTGGCCTTTACGTTCTCAATGCTGTCGGAAGATTCGA 24134 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | ||||| || || || ||||| ||||| |||||||| Sbjct 24133 CATCGAGGGTGATGGTCTTTCCTGTTAAGGTTTTGACGAAGATTTGCAT 24085 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || | | ||| ||||||| ||| || |||||||| ||||| ||||| Sbjct 24768 GCCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGC 24709 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| | |||||||||||| | || || | || ||||| ||||| Sbjct 24708 CAAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGG 24649 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| ||| | | ||| | | || | | ||| || Sbjct 24648 GATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAAC 24589 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || |||||||| || || || || ||||| Sbjct 24588 ATCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 >seq156 Length=23114 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTC 143031 || || ||||||| || ||||||||||| ||||| || || ||| | | || | || Sbjct 22154 AATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA-TC 22212 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| || || || || ||| |||| |||||||||||||| ||||| || ||||||||||| Sbjct 22213 TTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTC 22272 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 |||||| ||||| | || | | || | | |||||| || | || | ||| Sbjct 22273 TTGAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTACATCTAAGGTAATCGT 22332 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| || || | || || || || ||||||||| Sbjct 22333 CTTTCCTGTGAGAGTCTTAACAAAAATTTGCATA 22366 >seq2459 Length=32074 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || |||| ||| | || || ||||| | || ||||||||||| |||||||| || ||| Sbjct 25514 CCACCTCTTAATCTTAAGACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCAGCT 25573 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || ||||| || || || || ||| |||| || || |||||||| ||||| Sbjct 25574 -AAGGTTCTTCCATCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGAGG 25632 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || |||||| ||||| | || | | || | | ||||| Sbjct 25633 AATTCCTTCTTTATCTTGGATTTTTGCTTTTACGTTCTCAATTGAATCAGAAGACTCTAC 25692 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || || | ||| || || || ||||||||| Sbjct 25693 ATCTAAAGTTATCGTCTTTCCTGTGAGTGTCTTAACAAAAATTTGCATA 25741 >seq1753 Length=65450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 ||||| || | ||| || |||||||| |||||||| || ||| | || || ||||| Sbjct 9425 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCAGCTAAG-GTCCTTCCATCTTC 9367 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || |||||| | || || | ||| ||||| ||||| || ||||||||||| Sbjct 9366 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 9307 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | |||| | | ||||| || | ||| | || || Sbjct 9306 GATTTTAGCTTTGACGTTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 9247 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || | |||||| ||||| || ||||| Sbjct 9246 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 9217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||||||||| | || || || ||||| ||||||||||| | Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || |||||||| || ||| |||| || | ||| ||||| || || Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||| | | ||| | | || | | || || Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| || | || || || ||||| ||||| || || ||||||||| || Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCATACCT 9897 >seq1008 Length=7107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 ||||| || | ||| || |||||||| |||||||| || ||| | || || ||||| Sbjct 7082 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCTGCTAAG-GTCCTTCCATCTTC 7024 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||| || |||||| | || || | ||| ||||| ||||| || ||||||||||| Sbjct 7023 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 6964 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | |||| | | ||||| || | ||| | || || Sbjct 6963 GATTTTAGCTTTGACATTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 6904 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || | |||||| ||||| || ||||| Sbjct 6903 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 6874 >seq114 Length=105167 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 || |||| ||| | || || || |||| || ||||||||||| ||||||||||| ||| Sbjct 3448 CCACCTCTTAATCTTAAGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAATCAGCT 3507 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | | || | ||||| || || || || ||| |||| || || ||||| || ||||| Sbjct 3508 AAGGTTCTTCCA-TCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGGTCTGGAGG 3566 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| || | | || | | || | | ||||| Sbjct 3567 AATTCCTTCTTTGTCTTGGATTTTTGCCTTCACGTTCTCAATTGAATCAGAAGACTCTAC 3626 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || || | || || || || ||||||||| Sbjct 3627 ATCTAAAGTTATCGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCATA 3675 >seq125 Length=105080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 176/258 (68%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 157333 AGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAA 157392 |||||| || ||||| |||||||| | ||| || |||| |||||| | ||||||||| Sbjct 73174 AGGACATTCATTAGGGCACATTAAAGTCCAGTCGCCATTTTTTTCAACTCTTTTCATAAA 73233 Query 157393 TATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAA 157451 | ||| |||| ||| | || | ||| || | ||| | || ||||| | |||| Sbjct 73234 CAAATCAGGAATCCAAAGGCCGAAAAACAAGTCTCTTGCTC-GTTGCTCTTCTTTACCAA 73292 Query 157452 TGTTTCG---ACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACA 157508 |||||| | |||| | ||| || | ||| || |||||| ||||||| || | Sbjct 73293 TGTTTCTTTTAAGCATTAGAAAATCG---AAAATATCAGCATGCCAAGGTTCAAGATAAA 73349 Query 157509 CTGCTTGGGCTCCTTTTCGCTTGCC---ACCTTGATCCACGTGACGCACCATATTATTAA 157565 | || | |||||||| || || ||||||||| || | | | ||| ||||| Sbjct 73350 CAGCAAATGATCCTTTTCTTTTTCCCCCACCTTGATCTACATATCTTGCTGTATCATTAA 73409 Query 157566 AAACTCGCAGCATTGGTA 157583 | |||| |||||||||| Sbjct 73410 ATACTCTAAGCATTGGTA 73427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506997744576960