Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1753 113 4e-20 seq2223 104 2e-17 seq1993 100 2e-16 seq2191 86.0 5e-12 >seq1753 Length=65450 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| |||||| | || | ||||| || |||||||||||||| |||||||| ||| Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || ||||| || ||| | |||||||| || ||||| ||| Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||| ||| || | | | | |||| || ||| Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || ||||| || || |||||||| ||||| |||||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 >seq2223 Length=42303 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| || | |||| ||||| || ||||| ||||||||||| ||||| || Sbjct 21627 CCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCAGCT 21686 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || || || || ||| | |||||||| |||||||| ||| Sbjct 21687 AAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGGGA 21746 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||| ||| || | ||| | |||| || || Sbjct 21747 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATACTATCTGAAGATTCAACA 21806 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || ||||| || |||||||| || |||||||| ||||| Sbjct 21807 TCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 >seq1993 Length=52953 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| |||| |||| || | || ||||| |||||||| || ||||| ||| Sbjct 24767 CCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCC 24708 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || | ||||||||| ||| ||||||||||||| ||||| || Sbjct 24707 AAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGG 24648 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || ||||||| ||| || | | | | |||| || || Sbjct 24647 ATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACA 24588 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| ||||| || || || || ||||||||||| |||||| Sbjct 24587 TCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCATT 24540 >seq2191 Length=126925 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| |||||||||| || | || ||||| || || || || || || || Sbjct 117869 CCACCTCTCAATCTTAACACCAAATGTAGTGTTGACTCTTTCTGGATGTTATAGTCTGCA 117810 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | |||| | | || || | || || || ||| ||||||||||||||||||| ||| Sbjct 117809 AGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTCTGCTGATCAGGGGGA 117750 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| || || | | | | |||| || ||| Sbjct 117749 ATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTTTCAATACTATCTGAAGACTCTACA 117690 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || ||||| ||||| | ||| || ||||| |||||||| Sbjct 117689 TCTAGAGTTATTGTTTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 117643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414559521751432