Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1753 98.7 6e-16 seq2223 89.7 3e-13 >seq1753 Length=65450 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| ||||| ||||||||||| || || ||||||| |||| | || ||| Sbjct 9653 ACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTACCATCTTCC 9594 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| || || | | ||| ||||| | ||| || |||||||| || | Sbjct 9593 AATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTATCTTGA 9534 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| ||| |||| | | ||||| || ||||| |||||| Sbjct 9533 ATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTTATAGTTTTT 9474 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| ||||| || || || ||||| Sbjct 9473 CCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq2223 Length=42303 Score = 89.7 bits (98), Expect = 3e-13 Identities = 165/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || | | |||||||||||||| ||||||||||| ||||| Sbjct 21617 AATCTGCATGCCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTTTTGAATATT 21676 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||| ||| | | || || | ||||||||| ||| || | | |||||| Sbjct 21677 ATAATCAGCTAAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTG 21736 Query 33253 GTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 || | ||| || |||||||| || | | | || ||| || ||| || | || Sbjct 21737 ATCAGGGGGAATTCCTTCTTTATCTTGGATTTTGGC---TTTGACATTTTCGATACTATC 21793 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || ||| || || || || |||||||| || | ||| || || ||||| ||||| Sbjct 21794 TGAAGATTCAACATCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || || |||||||||||||||||||| ||||| ||||||| ||| | | || || Sbjct 21873 ACTAAGTGCAATGTCGACTCTTTTTGGATATTATAATCAGCCAATGTCCTTCCATCTTCT 21932 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||| || || || || | | ||| ||||| | || || |||||||| || | Sbjct 21933 AGTTGTTTGCCTGCGAAGATAAGCCTTTGTTGGTCTGGAGGAATACCTTCTTTATCTTGG 21992 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| || |||| || || |||||| || ||||| ||| Sbjct 21993 ATTTTAGC---TTTAACGTTTTCGATGCTGTCTGAGGATTCAACGTCAAGCGTTATGGTT 22049 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || ||||| ||||| || ||||| Sbjct 22050 TTTCCAGTGAGGGTTTTGACGAAGATCTGCAT 22081 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 || || |||||||| ||||||||||| || ||||| |||| ||| | | || || Sbjct 22101 ACTAAGTGCAATGTTGACTCTTTTTGAATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCT 22160 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 | ||| || ||| || || | | ||| || || | || || |||||||| || | Sbjct 22161 AGTTGTTTGCCAGCGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 22220 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || ||| ||| |||| || || |||||| || ||||| ||| Sbjct 22221 ATTTTGGC---TTTAACGTTTTCAATGCTGTCTGAGGATTCAACGTCAAGTGTTATGGTT 22277 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || ||||| ||||| || ||||| Sbjct 22278 TTTCCTGTGAGGGTTTTGACGAAGATCTGCAT 22309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318767389951944