Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2191 138 8e-28 seq2223 125 5e-24 seq1753 122 6e-23 seq1260 122 6e-23 seq1993 113 3e-20 seq156 104 2e-17 seq2459 100 2e-16 seq114 95.1 9e-15 seq1581 89.7 4e-13 >seq2191 Length=126925 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 43890 ATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAAT 43949 || |||| |||||||||||||||||||||||||| || |||||| || || ||||| | Sbjct 117874 ATTAACCACCTCTCAATCTTAACACCAAATGTAGTGTTGACTCTTTCTGGATGTTATAGT 117815 Query 43950 CGTTTAATTGA-CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCC 44008 | | || || | | |||| || ||||| || |||||||| || | | ||||| || Sbjct 117814 C-TGCAAGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTCTGCTGATCA 117756 Query 44009 TGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGC 44068 | || | |||||||||||| ||||||| || || | ||| | |||||| | | Sbjct 117755 GGGGGAATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTTTCAATACTATCTGAAGAC 117696 Query 44069 TCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| | || |||||||| || || | |||||| ||||| |||||||| Sbjct 117695 TCTACATCTAGAGTTATTGTTTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 117643 >seq2223 Length=42303 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||||||| | |||||||| | || ||||||||||||||||||||| | Sbjct 21627 CCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCAGCT 21686 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | ||| ||||||||||| || | | |||||| || | || Sbjct 21687 AAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGGGA 21746 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| |||||| | | | | |||||| | || ||| Sbjct 21747 ATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATACTATCTGAAGATTCAACA 21806 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || ||||||||||| ||||| || ||||| Sbjct 21807 TCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 >seq1753 Length=65450 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| | || ||||| || || |||||| |||||||||||||| | Sbjct 10355 CCACCTCTAAGTCTAAGAACTAAATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCT 10296 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | ||| |||||||||||||| | | |||||| || |||| Sbjct 10295 AAGGTTCTTCCATCTTCAAGTTGCTTTCCTGCAAATATAAGTCTTTGCTGATCAGGAGGA 10236 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| ||| || | ||| | |||| | | ||||||| Sbjct 10235 ATTCCTTCTTTATCTTGTATTTTAGCTTTCACATTTTCAATACTATCGGATGACTCCACA 10176 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || |||||||| ||||| || ||||| Sbjct 10175 TCAAGAGTAATAGTTTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 10129 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||| ||||| | ||||| |||| || ||||||||| || |||||||| Sbjct 9900 ACCTCCTCTTAATCTAAGAACCAAGTGTAAAGTTGACTCTTTTTGGATGTTATAATCAGC 9841 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| || | |||||||| |||||||| | || ||| || || |||| Sbjct 9840 CAAAGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAATATAAGCCTTTGTTGATCTGGAGG 9781 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||| ||| || | ||| | |||| | || || Sbjct 9780 AATACCTTCTTTATCTTGGATTTTAGCTTTAACGTTTTCAATGCTGTCTGAGGATTCTAC 9721 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | ||||| || ||||| |||| |||||| ||||| || ||||| Sbjct 9720 ATCAAGTGTAATAGTCTTACCAGTTAGAGTCTTGACAAAAATCTGCAT 9673 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| || | || ||||| | || ||| |||||||| || ||||| Sbjct 10128 ACCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGC 10069 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| || | ||||||||||||||| || | | ||| || || | || Sbjct 10068 CAAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGG 10009 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||| |||||| | ||| | |||| | | ||| || Sbjct 10008 GATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAAC 9949 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || ||||| || || ||||| || ||||| |||||||| Sbjct 9948 ATCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| | |||||||||| || ||||||||| || |||||||| Sbjct 9671 CCACCTCTGAGTCTAAGAACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCC 9612 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| |||||||||||||| || || || | || ||| ||||| | || Sbjct 9611 AAAGTCCTACCATCTTCCAATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 9552 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| |||||| |||||| | ||| | | |||| | ||| || Sbjct 9551 ATACCTTCTTTATCTTGAATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACG 9492 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | || || ||||| || ||||| Sbjct 9491 TCAAGTGTTATAGTTTTTCCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq1260 Length=79673 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||| ||| | ||| |||||||| || ||||||||||| |||||||| Sbjct 62409 CCACCTCTCAGTCTCAGCACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAATCAGCA 62468 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | | |||| || ||||| || |||||||| || | | |||||| || |||| Sbjct 62469 AGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAGGAGGG 62528 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||||| ||| || | ||| | | |||| || || ||| Sbjct 62529 ATGCCTTCTTTGTCTTGTATTTTCGCTTTCACATTTTCAATACTGTCTGACGATTCTACA 62588 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || ||||||||||| || ||||||||||| Sbjct 62589 TCTAAAGTTATAGTTTTCCCAGTTAAAGTCTTGACGAATATTTGCAT 62635 >seq1993 Length=52953 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| |||||||| || ||||| || || |||||||||||||||||||| Sbjct 24539 CCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAGCA 24480 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| || |||||||| || |||||||| | | ||| || || |||| Sbjct 24479 AGTGTTCTACCATCTTCTAATTGTTTGCCAGCAAATATAAGTCTTTGTTGATCTGGAGGG 24420 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||||| ||||| |||||| | ||| | |||||| | || ||| Sbjct 24419 ATACCTTCTTTATCTTGGATTTTAGCTTTGACGTTTTCAATACTATCTGATGATTCAACA 24360 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || | ||| || || || |||||||| Sbjct 24359 TCTAAAGTTATAGTCTTGCCTGTCAGAGTTTTGACGAAGATTTGCAT 24313 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||||||||||| |||||||| || || |||||||||||| |||||||| Sbjct 24767 CCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCC 24708 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || || ||||| || ||||| || | | || || || |||| Sbjct 24707 AAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGG 24648 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| ||| || | ||| | |||| | | || ||| Sbjct 24647 ATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACA 24588 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 24587 TCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 >seq156 Length=23114 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | |||||| |||||||| || || ||||||||||| ||||| || | Sbjct 22139 CCACCTCTAAGTCTTAATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCT 22198 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | || ||||||||||| || | |||||||| || |||| Sbjct 22199 AAGGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGA 22258 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| ||| || | ||| | ||| | | || ||| Sbjct 22259 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTACA 22318 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 22319 TCTAAGGTAATCGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCAT 22365 >seq2459 Length=32074 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| |||||||| || || ||||||||||| || || || Sbjct 25513 ACCACCTCTTAATCTTAAGACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCAGC 25572 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | || ||||||||||| || | || ||||| || |||| Sbjct 25573 TAAGGTTCTTCCATCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGAGG 25632 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| |||||| ||| || | ||| | ||| | | ||| || Sbjct 25633 AATTCCTTCTTTATCTTGGATTTTTGCTTTTACGTTCTCAATTGAATCAGAAGACTCTAC 25692 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || || || || || | ||||| ||||| |||||||| Sbjct 25693 ATCTAAAGTTATCGTCTTTCCTGTGAGTGTCTTAACAAAAATTTGCAT 25740 >seq114 Length=105167 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| |||||||| ||||| || || || |||||||| || || ||||| | Sbjct 3448 CCACCTCTTAATCTTAAGACCAAGTGAAGAGTCGATTCTTTTTGGATGTTGTAATCAGCT 3507 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | || ||||||||||| || | || |||||||| |||| Sbjct 3508 AAGGTTCTTCCATCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGGTCTGGAGGA 3567 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| |||||| || || | ||| | ||| | | ||| ||| Sbjct 3568 ATTCCTTCTTTGTCTTGGATTTTTGCCTTCACGTTCTCAATTGAATCAGAAGACTCTACA 3627 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || | |||||| ||||| |||||||| Sbjct 3628 TCTAAAGTTATCGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 3674 >seq1581 Length=69860 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | |||||| ||||| || || || ||||||||||| ||||| || | Sbjct 28548 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCT 28607 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || | |||| || | || ||||||||||| || | || ||||| || |||| Sbjct 28608 AAGGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAAGATAAGGCGCTGCTGATCAGGAGGA 28667 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||| ||| ||||| || || | ||| | ||| | | ||| || Sbjct 28668 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGAATCAGAAGACTCTACG 28727 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | |||||||| || || || | |||||| ||||| |||||||| Sbjct 28728 TCTAAGGTAATTGTCTTTCCTGTGAGAGTCTTAACAAAGATTTGCAT 28774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766236916944