Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1993 127 2e-24 seq2191 104 2e-17 seq1260 104 2e-17 seq1753 98.7 8e-16 seq1 91.5 1e-13 seq156 86.0 5e-12 >seq1993 Length=52953 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || || | |||||||| ||||| || |||||||| ||||| ||||| || Sbjct 24767 CCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCC 24708 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| || ||||| || ||| ||||||| ||||||||||| || Sbjct 24707 AAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGG 24648 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| ||| || | ||| | ||| || ||| Sbjct 24647 ATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACA 24588 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| || ||||| || ||||||||||| |||||| Sbjct 24587 TCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCATT 24540 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| ||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 24541 TTCCACCTCTTAATCTTAAAACTAAATGAAGAGTTGATTCTTTTTGAATATTATAATCAG 24482 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| || |||||| ||||||||||| ||| | ||||| || |||||||| | Sbjct 24481 CAAGTGTTCTACCATCTTCTAATTGTTTGCCAGCAAATATAAGTCTTTGTTGATCTGGAG 24422 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| ||| || | ||| | ||| | ||| Sbjct 24421 GGATACCTTCTTTATCTTGGATTTTAGCTTTGACGTTTTCAATACTATCTGATGATTCAA 24362 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || || ||||| |||| |||||||| || |||||||| Sbjct 24361 CATCTAAAGTTATAGTCTTGCCTGTCAGAGTTTTGACGAAGATTTGCAT 24313 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || ||||| || | || ||||| || || ||||||||||| ||||||||||| | Sbjct 24311 CCGCCACGTAATCTGAGGACTAAATGAAGGGTTGATTCTTTTTGAATGTTGTAATCAGCA 24252 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | |||||| | |||||| || || | || || || |||||||| ||| Sbjct 24251 AGAGTTCGACCATCTTCAAGTTGTTTACCAGCGAAGATCAGTCTTTGTTGATCAGGGGGG 24192 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || |||||| || || | ||| ||| || ||| Sbjct 24191 ATTCCTTCTTTATCTTGAATTTTGGCCTTTACGTTCTCAATGCTGTCGGAAGATTCGACA 24132 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | ||| ||||| || || || || |||||||| || ||||||||| Sbjct 24131 TCGAGGGTGATGGTCTTTCCTGTTAAGGTTTTGACGAAGATTTGCATT 24084 >seq2191 Length=126925 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| || || ||||||||||||||||| || ||||| || ||||| || || | Sbjct 117869 CCACCTCTCAATCTTAACACCAAATGTAGTGTTGACTCTTTCTGGATGTTATAGTCTGCA 117810 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||| ||||| ||||| ||| ||||||| ||||| ||||| ||| Sbjct 117809 AGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTCTGCTGATCAGGGGGA 117750 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||||| || || | ||| | ||| || || Sbjct 117749 ATTCCTTCTTTATCTTGAATTTTTGCCTTAACATTTTCAATACTATCTGAAGACTCTACA 117690 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || |||||||| || | || || ||||| |||||||| Sbjct 117689 TCTAGAGTTATTGTTTTGCCTGTAAGAGTCTTAACAAAGATTTGCAT 117643 >seq1260 Length=79673 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 |||| ||| ||||||||||| ||||||||||| ||||| ||||| | | ||| | | Sbjct 62421 CTCAGCACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAATCAGCAAGTGTTCTCCCA 62480 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| ||||| ||||| ||| ||||||| || || ||||| || | |||||||||| Sbjct 62481 TCTTCTAATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAGGAGGGATGCCTTCTTTG 62540 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || ||||| |||||| | ||| | || | ||| || | || || Sbjct 62541 TCTTGTATTTTCGCTTTCACATTTTCAATACTGTCTGACGATTCTACATCTAAAGTTATA 62600 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || || || || ||||| || |||||||| Sbjct 62601 GTTTTCCCAGTTAAAGTCTTGACGAATATTTGCAT 62635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || || || || |||||||| ||||||||||| | | ||| | |||||| Sbjct 62883 ACTAAGTGAAGAGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTTCTTCCATCTTCT 62942 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| ||||| ||| | |||||||| |||||||| || | |||||||||||| Sbjct 62943 AATTGCTTGCCTGCAAAGATAAGCCTTTGTTGATCAGGAGGAATGCCTTCTTTGTC 62998 >seq1753 Length=65450 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||||| ||| || |||||||| ||||| ||||| ||| ||| || ||||||| Sbjct 9653 ACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTACCATCTTCC 9594 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || | |||||||| ||||| || ||| | |||||||| || | Sbjct 9593 AATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTATCTTGA 9534 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | || || || || | || || ||||| Sbjct 9533 ATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTTATAGTTTTT 9474 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || | ||||||||||| || ||||| Sbjct 9473 CCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||||| | || ||||| | || || || ||||| ||||||||||| || Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||| || | |||||| || ||| | ||||| || |||||||| ||| Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || ||||| ||| || | ||| | ||| || || Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 >seq1 Length=265894 Score = 91.5 bits (100), Expect = 1e-13 Identities = 181/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 19941 AATAAATTTTATTATAAAATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACA 20000 || ||||||| || | ||| |||||| || | | | || || || | || | | Sbjct 160888 AAAAAATTTTTTTTTGAAACCTAAATAAGCTTATTAACTAGCCACCACGAAGTCTGAGGA 160829 Query 20001 CCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCA 20060 | ||||| ||||| ||||| || || ||||| || || | | ||| | |||||||| Sbjct 160828 CTAAATGGAGTGTTGATTCCTTCTGAATGTTATAGTCAGCTAAGGTTCTGCCATCTTCCA 160769 Query 20061 ATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAA 20120 ||||||| || ||| ||||||| ||||||||||| ||| | ||||| || || || Sbjct 160768 ATTGTTTCCCGGCAAAAATAAGTCTCTGTTGATCAGGGGGGATTCCTTCCTTATCTTGAA 160709 Query 20121 TTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGC 20180 | || ||| || | ||| || | ||| |||| || |||||||| | Sbjct 160708 TCTTAGCTTTAACATTTTCAATGCTGTCAGATGATTCAACATCCAAAGTGATGGTTTTAC 160649 Query 20181 CGGTCAACGTTTTGACAAAAATTTGCAT 20208 | || || || |||||||| |||||||| Sbjct 160648 CAGTTAAGGTCTTGACAAATATTTGCAT 160621 >seq156 Length=23114 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 || || |||||||| || || ||||||||||| ||||| || || | | ||| | | Sbjct 22151 CTTAATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA 22210 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 ||||| | || || || ||| | ||||| | || ||||| || | ||||||||| Sbjct 22211 TCTTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTG 22270 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATG 20173 || |||||| ||| || | ||| ||||| || ||| || | |||||| Sbjct 22271 TCTTGAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTACATCTAAGGTAATC 22330 Query 20174 GTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTTA 20213 || || || || | || || |||||||||||||| |||| Sbjct 22331 GTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATATTTA 22370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419573761146468