Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2384 221 1e-52 seq1417 194 1e-44 seq2033 178 1e-39 >seq2384 Length=116048 Score = 221 bits (244), Expect = 1e-52 Identities = 606/915 (66%), Gaps = 19/915 (2%) Strand=Plus/Plus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||| || || || | |||||||||||||||||| || |||| | || || Sbjct 41573 TTTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTTACCTTGCATTGATATCA 41632 Query 12918 TTTCCATAAAATCGAAAGGATTT--TTCGAACAATAGTATTTTTTACACCCTAATTCTAG 12975 | ||||| | || ||||||||| | || ||| |||| | ||| || || | | Sbjct 41633 TCTCCATCCATTCAAAAGGATTTAATACGCGGTATA--ATTTATCACAACCCAAAGCAAC 41690 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 ||| | ||| |||||||||||||| | || || ||| | ||||||| || || Sbjct 41691 TAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGCCTTGAGTTCATACCAAT 41750 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 | || ||| || | ||||||||||| ||| | ||| || || |||| ||||| || Sbjct 41751 AAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATTTCAATAGCTTCACGAAT 41810 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATT--TGA-TAGATGCTTAAACATCATACA 13152 || || ||| | ||| || | | || | | || ||| | | | ||| Sbjct 41811 AATTTCATAGATT---TGATCTTGTGAAAGCTTATTAACTATATGTGAGTATAGTAAACA 41867 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 |||||||| || | |||||||||| |||||| || || || |||||||| || || Sbjct 41868 AGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCATTGGAAAATGTGAGCCC 41927 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC-GaaaaaaaTA 13271 |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || | Sbjct 41928 TGGCATAAGAGAACGTTTTTTCATCCAGAATATTGC-GCAAAAACTCCCAGAAAAGAAAA 41986 Query 13272 TTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTA 13331 | ||||| | || || | || | | |||| || | |||| | || | || Sbjct 41987 TCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAG---CTATCGCTGCTATTTA 42043 Query 13332 TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT-ATTGCGTTA 13390 |||| || ||||||| |||||| | ||||| | | | | | | | || || || Sbjct 42044 TCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGA-TGGAAAGTGTGTGATAGCATTG 42102 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 ||||| | ||||||| | | | ||||| || || || | | ||| || Sbjct 42103 AATAACATACTTTTTTCTTGAACATTAGTGATATATGTGTCGATAAGCATCGAATAAGTT 42162 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 || ||||| ||||||||| ||||| || || ||||||||| || |||||| | | Sbjct 42163 TCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAAAGCTCGAGCCTCAGGAATT 42222 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTT-TCGTTAACTATCCCGTCACTAGCAGC 13569 |||||||| | | || ||| | ||| || || || ||||| ||| |||||| Sbjct 42223 TGAACTTCACAAAAGAA-CTTAGTAGCAAGATTCTCCAATACAATCCCATCAGAAGCAGC 42281 Query 13570 aaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATC 13629 ||||||||| | | | ||||||||| | | |||| || || | | ||| |||||| Sbjct 42282 AAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTATCAGTAAGTTTTTCCCAATC 42341 Query 13630 TGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTT 13689 | || |||| | || || | ||| ||| | ||||||||| ||| || ||||| Sbjct 42342 ACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAAAACTAGCTTCATGTTTCTT 42401 Query 13690 ATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCTTCCAGTTGTCTG 13749 |||||| |||| ||||| |||| || ||||||| || |||| || ||| Sbjct 42402 ATACATAGTCCAAATATCACTATATTGTATTGGAAACATGACAAATCTGTTAGGATTCTC 42461 Query 13750 TCTTAAAATCGGTTC 13764 ||||| ||||| || Sbjct 42462 TCTTAGTATCGGCTC 42476 >seq1417 Length=75703 Score = 194 bits (214), Expect = 1e-44 Identities = 614/941 (65%), Gaps = 17/941 (2%) Strand=Plus/Plus Query 12803 TAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTTT 12862 |||||||| | ||| || ||| | | || || || || | |||||| |||| Sbjct 13588 TAAAAATCCACATCAAGCCTAAACATCTGTTCATCTTTCTTCGCCATAACCCCAGTTTTC 13647 Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || || ||||| |||||||| || || || || || | | ||||| | ||| Sbjct 13648 TGATAATCACTCACTCTCTTTTCAAAGAAATTCGTCTTACCCTGCATAGAAATCATCTCC 13707 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTT-ACACCCTAATTCTAGTAACAA 12981 || | || ||||||||| | ||| |||||| | ||| ||||| | | | || Sbjct 13708 ATCCACTCAAAAGGATTTGCCACTTTATA-TATTTTCTCACATCCTAAAGCAATAAGTAA 13766 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||| || |||| ||| || | || || ||| | | |||||||| || |||| Sbjct 13767 TCTATCCGCAATAAATTCAAGATATTGAGACATAAGCCTTGAATTCATTCCAATCAATTC 13826 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | |||||| || | ||| | || ||| || || ||||| || || || Sbjct 13827 AACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAATTATAATAGCTTCACGAATCATATC 13886 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 | || || | | | | | ||| | || || | | || ||| |||||||| Sbjct 13887 TTGAATAACTTCTTGTGGTAGCTTATTAACAATGTGAGTATATAACAAACAAGCAAAATC 13946 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 || || |||||||||||||| || || || || |||||||| ||||| |||||||| Sbjct 13947 TGTATGTAAACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGCATAAG 14006 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC-GaaaaaaaTATTCCTTCAA 13280 |||||||| | ||| || || | | |||| | ||| ||||| || || ||||||| Sbjct 14007 TGAACGTTTTTTCAGCCAGAAAATCG-AACAAAAGCTCCCAGAAAAGAAAATACCTTCAA 14065 Query 13281 CTGCTGCAAACGCTATCAACCTTT---CACCATACGTACTATTTTTACTCTCTATCCACT 13337 |||| ||| | |||| | |||| || | | | || | || || ||||| | Sbjct 14066 CTGCAGCATATGCTACAAGTCTTTGGGCAAAACATGCAC------TGCTATCAATCCATT 14119 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATA-TTTTCTATTGCGTTAAATAAA 13396 | ||||| | ||||||| ||||| | |||| | || | |||||| |||| ||| Sbjct 14120 TCAAAGCCCAATCAGCTTTTTTTTTAA-TCGATTCAAAGTTGTTTATTGCATTAAGTAAT 14178 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 |||||||| | | ||| ||||| || || || || | ||| | || Sbjct 14179 ATGTTTTTTTCTTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCACTG 14238 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || || |||||||| || ||||| || |||||||| || ||| || | | |||||| Sbjct 14239 TGTATGTTTTCCATAGCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGAACT 14298 Query 13517 TCGGAGTAAAATCTTTCTGCTAAG-TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 || || |||||| | ||| ||| ||||| || || || ||| ||| |||||||| Sbjct 14299 TCACAGAAAAATC-TACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAAAAA 14357 Query 13576 aGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAA 13635 ||| | | | || ||||| | |||| | || | ||| || ||||||| | Sbjct 14358 AGCTAAAACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCTTAG 14417 Query 13636 ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 ||||| | ||||| | ||| || ||||||||| || || ||| || ||||| Sbjct 14418 ATCTTGAGCCAAATCAAGCTCTTCTGAAGTCCAAAAACTTGCTTCATGCTTTTTGTACAT 14477 Query 13696 CATCCATATATCCTTATAAACAATGGGAAACACAACGTATC 13736 |||| ||||| || || || || |||| ||| ||| Sbjct 14478 AGTCCAGATATCGTTGTATTGTATCGGGAACATGACGAATC 14518 >seq2033 Length=51049 Score = 178 bits (196), Expect = 1e-39 Identities = 607/938 (65%), Gaps = 15/938 (2%) Strand=Plus/Minus Query 12833 TCGTCCTTATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAG 12892 || ||||| || | |||||| |||| ||| | || | || | ||||||| |||| Sbjct 9578 TCATCCTTTTTCGCCATAACTCCTGTTTTCTGACACTCATTCACACGATTTTCAATAAAG 9519 Query 12893 TTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAG 12952 ||||| || || || | || | ||||| | || ||||||||| | || || Sbjct 9518 TTTGTCTTGTATTGTATTGGTATTATCTCCATCCATTCAAAAGGATTTAATGCACGGTAT 9459 Query 12953 TATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTC 13012 |||| | | | ||||| ||| ||| | || |||| || |||||| | ||| || | Sbjct 9458 AATTTATCATAGCCTAAAGCTATTAAAAGCCTATCAGAAATAAACTCAAGGTATTGAGAC 9399 Query 13013 ATTAAATCAC-AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGttttt 13071 || || || ||||||| || || | || || || | || |||| | | ||| | || Sbjct 9398 AT-AAGTCTTGAGTTCATACCAATAATTTCAACTGGAAGAGTTTCTATAATAAATTCCTT 9340 Query 13072 ttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT--T 13129 ||| || || | ||||| || || || | ||| | ||| || | | || | Sbjct 9339 TTCAATTTCTATAGCTTCACAAATTAATTCATTGATT---TGATCTTGTGAAAGCTTATT 9283 Query 13130 GA-TAGATGCTTAAACATCATA--CATGCAAAATCACAGTGCAATCCTTCATCTCTACTT 13186 || |||||| | || || ||| || | |||||| || || | || ||||||||| Sbjct 9282 GACTAGATG--TGAATATAATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTT 9225 Query 13187 ATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATA 13246 || || | |||||| |||| || || |||||||| |||||||| | ||| || || Sbjct 9224 ATGAGTTTATTTGAAGATGTGAGTCCTGGCATAAGTGAACGTTTTTTCACCCAGAAGATG 9165 Query 13247 GCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCA 13306 || ||| ||| |||||||| |||||||| | || | || | | ||||| | Sbjct 9164 GCGCAAAAACTACCAGAAAAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGA 9105 Query 13307 CCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG 13366 || | ||| | | | | || ||| || ||||||| ||||| | ||||| Sbjct 9104 GCAAA---ACTGTCGCTGTTATTTACCCATTTCAAAGCCCAGTCAGCTTTCTTTTTAATT 9048 Query 13367 CAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAA 13426 | | | | ||| | || ||||| ||||||| | | || ||||||| Sbjct 9047 GATGGAAGGTGTATTATATCATTCAATAACATGGTTTTTTCTTGAGCATCAGTAATATAA 8988 Query 13427 GTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCA 13486 || || || | | | ||| | |||||||||||| || |||| || || ||| Sbjct 8987 GTGTCGATAAGCATGGAATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATCCA 8928 Query 13487 TAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCG 13546 |||||| || |||||| | | |||||||| | ||||| | || | || || Sbjct 8927 TAAAAAGCTCGAGCCTCAGGAATTTGAACTTCACAAAAAAATTTAGTAGCAAGATTCTCT 8868 Query 13547 TTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCG 13606 || |||| ||| ||| ||||||||||| | || | |||||| || | ||||||| Sbjct 8867 AATACAATCCTATCAGAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTTCG 8808 Query 13607 TTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTC 13666 || || | | ||| ||||||| | || |||| || || || | | ||| | ||| Sbjct 8807 TTATCAGTAAGATTTTCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAGCAGTC 8748 Query 13667 CAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAAC 13726 |||||| ||| || |||||||||||| |||||||||| |||| |||||||| Sbjct 8747 CAAAAACTAGCTTCATGCTTCTTATACATAGTCCATATATCACTATATTGTTTGGGAAAC 8688 Query 13727 ACAACGTATCTTCCAGTTGTCTGTCTTAAAATCGGTTC 13764 | || |||| | || || ||||| ||||| || Sbjct 8687 ATGACAAATCTGCTAGAATTCCCTCTTAGTATCGGCTC 8650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430968596172456