Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq317 217 2e-51 seq1842 178 2e-39 >seq317 Length=19370 Score = 217 bits (240), Expect = 2e-51 Identities = 407/594 (69%), Gaps = 18/594 (3%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 ||||| |||||| | || ||||||| |||| ||||||| ||||||||||| | || Sbjct 10146 AATTTCGAAGAACTCGGTATAGGTGGTTTAGACAGAGAATTCGCTCTTATTTTCCGTAGA 10087 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAACATAT 164516 || |||||||| || | |||| | | || | | ||||| | || | ||||| | Sbjct 10086 GCTTTTGCTTCAAG-GCTTTTCCCACCTCAAGTTGTTAAAAAGCTTGGAATTCAACATGT 10028 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 | ||||| | | |||| ||||| ||| || ||||||||||| || || || Sbjct 10027 ACGTGGAATGCTTCTTTATGGTCCTCCAGGTACAGGAAAAACATTAATAGCAAGACAAAT 9968 Query 164577 TGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAAC 164634 || || | ||||| ||| || || ||||| || ||||| |||||| |||| | Sbjct 9967 AGCAAAATGTCTTAAAGCTCGTGAACC--AAAAATCGTCAATGGCCCTGAAGTATTTGAT 9910 Query 164635 AAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAA 164694 || || ||||| | ||||| || ||||| | |||||| | || |||||| |||| Sbjct 9909 AAGTACGTAGGACAAACAGAACAAAACATTAGAGATTTGTTTAAAGAAGCTGAACAAGAG 9850 Query 164695 CAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCT 164754 ||| | ||| ||| || ||||||||| ||||||| || ||||| || |||||| Sbjct 9849 CAAGAAAAAATGGGTGATAAAAGCAAATTACATATTATTGTCTTAGATGAAATTGATGCT 9790 Query 164755 CTTTGCAAA--------AAACGT----GGTGATAATATTATTCATGATGCAGTGGTTAAT 164802 |||| | | || || || | || || | |||||||| ||| || ||| Sbjct 9789 ATTTGTAGACCTAGAGGAACAGTTTCAGGAGGTACTAATGTTCATGATACAGCTGTCAAT 9730 Query 164803 CAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATG 164862 || || | || ||||| ||||| ||| | || ||||| ||||||||| || | |||||| Sbjct 9729 CAATTATTATCAAAAATCGATGGGGTAAATTCTTTAAACAATATTTTACTTATTGGTATG 9670 Query 164863 ACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAA 164922 || || || ||| | |||||||| || | ||| |||| || | |||||| || | Sbjct 9669 ACAAATAGAAAAGATATGATTGATGAAGCAATTTTAAGACCAGGAAGGTTAGAAATGCAT 9610 Query 164923 ATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCAT 164976 | |||||| ||||| || ||| ||||| ||||||| ||||| ||||| Sbjct 9609 GTGGAAATATCCTTACCTGATGAAGCTGGACGTGTTCAAATATTAAATATTCAT 9556 >seq1842 Length=60065 Score = 178 bits (196), Expect = 2e-39 Identities = 414/617 (67%), Gaps = 22/617 (4%) Strand=Plus/Minus Query 6801 TCGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAG 6860 || ||||||||| ||| | | | ||||| | | ||||| ||||| |||||| | Sbjct 52374 TCTAGTTAATTGGATTTTAAGTGGCTCAATATGGTTTGTATAAACATGAGTATCTCCAAT 52315 Query 6861 CGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAA 6920 ||||| || |||||| || | ||| | ||||||||||||| ||||||||| Sbjct 52314 AACATGAACGAAGTCACCTCTTTGTAAGTCACAAACTTGAGCAATTAAGCATGTTAATAG 52255 Query 6921 TGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACA 6980 || || || ||||||||||| || ||||| |||||||| ||||||| |||| ||| Sbjct 52254 TGAGTAGCTTGCAACATTAAAAGGAACGCCTAAACCCATATCGCCTGATCTCTGAT-ACA 52196 Query 6981 TTGACAAGATAAAAT----ATTGTCTATAGCATAAAATTGACACAATACATGACATGGAG 7036 | || | | | ||| |||| || |||| || || | ||||| || |||| Sbjct 52195 TAAGGCAGTTGAGTTTTCCATTTTCTA---CAAAAAACTGGCAAAGAACATGGCAAGGAG 52139 Query 7037 GTAAAACAGCCTGATCTATATCAGAT---GGATTCCAAGCAGTCATTAAAATACGTCTAT 7093 | || |||| | | | |||| |||||||||||| |||||| ||||| | Sbjct 52138 GCAA---AGCCATAAATGGTTGAGATTTAGGATTCCAAGCACTCATTACTATACGACGTG 52082 Query 7094 CATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAA-TTGATCTATACCCTGACCT 7152 || |||| |||||||| | | |||| | | || || ||||| | || || | Sbjct 52081 AATCAGGATCTGTTTTTATAAGTTTAATAACT-TCTGCAAGCTGATCAACTCCTTGGTTT 52023 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 ||| | || || ||| |||| | ||||||||||||||||||||| || || ||| Sbjct 52022 GTATAGTCAGCATTCATATTAGTATATTCAGCTCCAAAATGTCTCCATTGGAAACCGTAA 51963 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT 7272 | || |||| ||| || |||| | || |||||| || | | || ||| | | Sbjct 51962 ACTGGCCCTAGATCTCCAACTTCTCTATCATTAAAGCCGAGTTTATCTAAGAAATCCCTA 51903 Query 7273 GATCCATAAGCATCCCAAATATGTACAGAttt---ttttGATAAATTTAAAGAATTTGTA 7329 ||||| |||||||| ||||| ||| ||| || || ||| || |||||| Sbjct 51902 CTTCCATTTGCATCCCAGATATGGACACCTTTAGCACTTAATTCATT---AGCATTTGTG 51846 Query 7330 GATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTA 7389 |||| ||| |||||||| |||||||| || | | | |||||||| | |||||| Sbjct 51845 CTTCCTCTAATAAACCATAAGAGTTCTTCAACCACTGCTTTCCAAAACACTAATTTTGTT 51786 Query 7390 GTGAATAAAGGGAATGT 7406 || |||| ||||| || Sbjct 51785 GTAAATATTGGGAAAGT 51769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595852425604800