Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2384 279 5e-70 seq1417 260 1e-64 seq2033 167 2e-36 >seq2384 Length=116048 Score = 279 bits (308), Expect = 5e-70 Identities = 652/971 (67%), Gaps = 29/971 (3%) Strand=Plus/Plus Query 21110 TTTATAAAAATATT--TATTTAAAAATCAGCATCTAATGAGAAAACATTATCT--TCttt 21165 || || |||||||| ||| ||||| || |||| | | ||||||| || ||||| Sbjct 41498 TTAATGAAAATATTATTATCTAAAATTCCACATCAAGTCT--AAACATTTGCTCATCTTT 41555 Query 21166 ttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTT 21225 ||| | ||||| ||| |||||||||| ||||| || | |||||| ||||| |||||||| Sbjct 41556 TTTCGCCATAACTCCTGTTTTTTGATACTCACTCACACGTTTTTCAAAAAAGTTTGTCTT 41615 Query 21226 TCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTT--TCAGATTTAAATATTTTA 21283 |||| || |||||| ||||| | ||||| |||||| | | || || |||| Sbjct 41616 ACCTTGCATTGATATCATCTCCATCCATTCAAAAGGATTTAATACGCGGTA--TAATTTA 41673 Query 21284 TTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAAT 21343 | |||||||| | ||| | |||||| || ||||| || | ||||||| |||| | Sbjct 41674 TCACAACCCAAAGCAACTAAAAGTCTATCAGCAACAAACTCAAGATATTGAGACATAAGC 41733 Query 21344 TCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATA 21403 | |||||||| || | || ||| |||||||||| ||| | ||| ||| || || Sbjct 41734 CTTGAGTTCATACCAATAAGTTCTACTGGAAGAGCTTCTGTTATAAATTCTTTCTCAATT 41793 Query 21404 GAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACT--AGGGGGATACAATAATT 21461 | |||||| ||| || || || | ||| | | | | || | || | Sbjct 41794 TCAATAGCTTCACGAATAAT--TTCATAGATTTGATCTTGTGAAAGCTTATTAACTATAT 41851 Query 21462 GTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCAT 21521 || | | ||||| |||||||| ||| | ||||||||| | |||||| | ||||| Sbjct 41852 GTGAGTATAGTAAACAAGCAAAATCTGTATGAAGACCTTCATCTCGACTTATCAGTTCAT 41911 Query 21522 TAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATG 21581 | |||||||| | || ||||| | | ||||| | ||| ||||||| |||||| Sbjct 41912 TGGAAAATGTGAGCCCTGGCATAAGAGAACGTTTTTTCATCCAGAATATTG-CGCAAAAA 41970 Query 21582 CTCCT-GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTA 21640 |||| ||||||||||| || || | ||||| ||||||| | || || | | || Sbjct 41971 CTCCCAGAAAAGAAAATCCCTTCTATAGCAGCGTATGCAACGAGTCTTTGGGCAAAGCTA 42030 Query 21641 --GATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAA 21698 | | || | | |||||||| ||||| | ||| || | |||||| | || Sbjct 42031 TCGCTGCTATTT-----ATCCATTTCAAAGCCCAGTCTGCTTTCTTTTTAATTGATGGAA 42085 Query 21699 T-TGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNN 21756 ||| | | |||| || || || || | ||||||| | |||| || || Sbjct 42086 AGTGTGTGA-TAGCATTGAATAACAT-ACTTTTTTCTTGAACATTAGTGATATATGTGTC 42143 Query 21757 NNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAA 21816 ||| ||||| ||| | |||||| || |||||||||||||| ||||| Sbjct 42144 GATAAGCATCGAATAAGTTTCACTATGAACATTTTCCATGGCTATCTGAAATCCATAAAA 42203 Query 21817 ACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTG-AGCCAAGTTTTCATTTA 21875 | || ||||| | | |||||| || || || | | | | ||| | || || || Sbjct 42204 AGCTCGAGCCTCAGGAATTTGAACTTCACAA-AAGAACTTAGTAGCAAGATTCTCCAATA 42262 Query 21876 CTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTAT 21935 | || |||||| || |||||||| || || | || || ||||| | || ||| |||| Sbjct 42263 CAATCCCATCAGAAGCAGCAAAAAAAGCTAAGACATACTTAATAAAGTGTCTTTCATTAT 42322 Query 21936 CTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAA 21995 | || | ||||| |||||| ||| |||| | || || | ||||||| ||||||| Sbjct 42323 CAGTAAGTTTTTCCCAATCACGTAAGTCTTGAGCCAAGTCCAACTCTTCAGCAGTCCAAA 42382 Query 21996 AGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTA 22055 | ||||| | || ||||||||| |||| |||||| ||||| ||||||||| || | Sbjct 42383 AACTAGCTTCATGTTTCTTATACATAGTCCAAATATCACTATATTGTATTGGAAACATGA 42442 Query 22056 CAAACCTGTTA 22066 |||| |||||| Sbjct 42443 CAAATCTGTTA 42453 >seq1417 Length=75703 Score = 260 bits (288), Expect = 1e-64 Identities = 614/913 (67%), Gaps = 25/913 (3%) Strand=Plus/Plus Query 21158 TCTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAA 21217 || ||||| || | ||||| || |||| ||||||||||| ||||| ||||| || ||| Sbjct 13618 TCATCTTTCTTCGCCATAACCCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAA 13677 Query 21218 TTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAAT 21277 || ||||| || | || || || ||||| | ||||| |||||| | |||| || Sbjct 13678 TTCGTCTTACCCTGCATAGAAATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATAT 13737 Query 21278 ATTTTATTACAACCCAGTTCTGATAA-TAATCTATCTGCTACAAATTCTATATATTGACA 21336 ||||| | ||| || | | |||| ||||||||| || | |||||| | ||||||| | Sbjct 13738 ATTTTCTCACATCCTAAAGCA-ATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGA 13796 Query 21337 CATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTT 21396 ||| | ||||||| || ||||||| || || | ||||| || | ||| || Sbjct 13797 CATAAGCCTTGAATTCATTCCAATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTC 13856 Query 21397 TTCTATAGAGACGGCTTCAACAATTATATTTATTATC-CTAGATGTACTAGGGGGATACA 21455 ||| || | |||||| ||| |||| | || || ||| ||| || Sbjct 13857 TTCAATTATAATAGCTTCACGAATCATATCTTGAATAACTTCTTGTGGTAGCTTATTA-- 13914 Query 21456 ATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATT 21514 | ||| || || | | |||||| |||||||| ||| ||||||||||| ||||| || Sbjct 13915 ACAATGTGAGTATATAACAAACAAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATA 13974 Query 21515 AATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGAC 21574 | ||||||||||||||| | ||| ||||| | | | ||||| | ||| || || || Sbjct 13975 AGTTCATTAGAAAATGTGAGACCAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAA 14034 Query 21575 GCAAATGCTCCT-GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTT---C 21630 |||| ||||| ||||||||||| || ||||| |||||| |||| || | || || | Sbjct 14035 -CAAAAGCTCCCAGAAAAGAAAATACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGC 14093 Query 21631 ACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAAT 21690 | ||| | | || | |||| |||||| ||||| | || |||| |||||| Sbjct 14094 AAAACATGCAC-TGCTAT---CAAT--CCATTTCAAAGCCCAATCAGCTTTTTTTTTAAT 14147 Query 21691 ACAATCAA--TTGTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTAT 21747 | |||| |||| | || || || | || ||| |||||||| | ||| |||| Sbjct 14148 CGATTCAAAGTTGTTT--ATTGCATTAAGTAATATG-TTTTTTTCTTGAGGATCTTTTAT 14204 Query 21748 GNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAA 21807 | ||| | ||| ||||| ||||| || || || ||||| Sbjct 14205 ATACGTGTCGATTAACATAGAATAAGTCTCACTGTGTATGTTTTCCATAGCAATTTGAAA 14264 Query 21808 TCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAG-T 21866 ||| ||||| || || || | |||||| || | |||||| | | |||| | Sbjct 14265 TCCATAAAATGCTCGAGCTTCAGGGATTTGAACTTCACAGAAAAATC-TACTGGCAAGAT 14323 Query 21867 TTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 |||| || ||||||||| || |||||||| || || | || ||||||||||| | Sbjct 14324 TTTCTAAGACAATTCCATCAGAAGCTGCAAAAAAAGCTAAAACATATTTTATAAAATGCC 14383 Query 21927 GTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAG 21986 ||| | ||| || ||| ||| ||||||| || ||||| | ||||| | ||||| | Sbjct 14384 TTTCATCATCAGTCAATGTTTCCCAATCTCTTAGATCTTGAGCCAAATCAAGCTCTTCTG 14443 Query 21987 TTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTG 22046 |||||||| || || | |||||| |||||| |||||||||| || ||| ||| | Sbjct 14444 AAGTCCAAAAACTTGCTTCATGCTTTTTGTACATAGTCCAGATATCGTTGTATTGTATCG 14503 Query 22047 GAAATATTACAAA 22059 | || || || || Sbjct 14504 GGAACATGACGAA 14516 >seq2033 Length=51049 Score = 167 bits (184), Expect = 2e-36 Identities = 625/967 (65%), Gaps = 24/967 (2%) Strand=Plus/Minus Query 21110 TTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTA--TCTTCttttt 21167 || || |||||||| || ||||| || ||| | | ||||||| || || |||| Sbjct 9625 TTAATGAAAATATT-ATCTAAAATTCCATATCAATTTT--AAACATTTGTTCATCCTTTT 9569 Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 | | ||||| ||| |||| ||| | ||| | || | ||||| | ||| |||||||| Sbjct 9568 TCGCCATAACTCCTGTTTTCTGACACTCATTCACACGATTTTCAATAAAGTTTGTCTTGT 9509 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTAC 21287 || | || ||| ||||| | ||||| |||||| | ||| ||||| | Sbjct 9508 ATTGTATTGGTATTATCTCCATCCATTCAAAAGGATTTAATGCACGGTATAATTTATCAT 9449 Query 21288 AACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCAC 21347 | || | || ||| | ||||| | | ||| || | |||||| |||| | | Sbjct 9448 AGCCTAAAGCTATTAAAAGCCTATCAGAAATAAACTCAAGGTATTGAGACATAAGTCTTG 9389 Query 21348 AATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGA 21407 | |||||||| || | || || ||||||| || | | | ||| ||||| || | Sbjct 9388 AGTTCATACCAATAATTTCAACTGGAAGAGTTTCTATAATAAATTCCTTTTCAATTTCTA 9329 Query 21408 CGGCTTCAACAATTATATTTATT-ATCCTAGATGTACT--AGGGGGATACAATAATTGTT 21464 |||||| ||||| ||| ||| || | ||| | | | | || | || ||| Sbjct 9328 TAGCTTCACAAATTA-ATTCATTGAT--TTGATCTTGTGAAAGCTTATTGACTAGATGTG 9272 Query 21465 TAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAG 21524 | | | ||||| | |||||| ||| |||| || || |||||||| | || ||| | Sbjct 9271 AATATAATAAACAAGAAAAATCTGTATGAAAACTTTTGTCTCTACTTATGAGTTTATTTG 9212 Query 21525 AAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT- 21583 || |||| | || ||||| | | | ||||| | ||| || || | |||||| || Sbjct 9211 AAGATGTGAGTCCTGGCATAAGTGAACGTTTTTTCACCCAGAAGATGG-CGCAAAAACTA 9153 Query 21584 CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTA--TGTAG 21641 || ||||| ||||| || || | ||| ||||||| | | || | | | ||| | Sbjct 9152 CCAGAAAAAAAAATTCCTTCTATAATAGCGTATGCAACAAGCCTTTGAGCAAAACTGTCG 9093 Query 21642 ATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAAT-T 21700 | |||| || |||||| ||||| | || || | |||||| | || | Sbjct 9092 CTG--TTATT---TACCCATTTCAAAGCCCAGTCAGCTTTCTTTTTAATTGATGGAAGGT 9038 Query 21701 GTATCAATAGCTTTTAA-AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNN 21759 |||| | || | || || || ||| |||||| | | |||| || || Sbjct 9037 GTATTA-TATCATTCAATAACATGGTTTTTT-CTTGAGCATCAGTAATATAAGTGTCGAT 8980 Query 21760 NNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACA 21819 ||| || ||| ||||||||||| ||||||||||||| |||||| Sbjct 8979 AAGCATGGAATAAGCCCCACTATGAATATTTTCTATGACTATCTGAAATCCATAAAAAGC 8920 Query 21820 TCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTAT 21879 || ||||| | | |||||| || || ||||| ||| | || || ||| || Sbjct 8919 TCGAGCCTCAGGAATTTGAACTTCACAAAAAAATTTAGTAGCAAGATTCTCTAATACAAT 8860 Query 21880 TCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGT 21939 | |||| ||||||||||| || || ||||| || || |||||| ||||||||| || Sbjct 8859 CCTATCAGAAGCGGCAAAAAAAGCTAAAATATTCTTAATGAAATATTTTTCGTTATCAGT 8800 Query 21940 TAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCT 21999 | |||| ||||||| || |||| || || || | || ||||| |||||||| || Sbjct 8799 AAGATTTTCCCAATCTTGCAAGTCTTGAGACAAGTCCAATTTTTCAGCAGTCCAAAAACT 8740 Query 22000 AGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 ||| | ||| ||||||||| |||| |||||| ||||| | | ||||| || ||||| Sbjct 8739 AGCTTCATGCTTCTTATACATAGTCCATATATCACTATATTGTTTGGGAAACATGACAAA 8680 Query 22060 CCTGTTA 22066 ||| || Sbjct 8679 TCTGCTA 8673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531883327058720