Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq114 102 8e-17 seq1581 98.7 9e-16 seq2223 96.9 3e-15 seq2459 91.5 1e-13 seq156 91.5 1e-13 seq2491 89.7 5e-13 seq1260 89.7 5e-13 seq1993 86.0 6e-12 seq1 82.4 7e-11 >seq114 Length=105167 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||||| || ||||| ||||||||||| ||| | | | | | || || |||||||| || Sbjct 3478 GTCGATTCTTTTTGGATGTTGTAATCAGCTAAGGTTCTTCCA-TCTTCAAGCTGCTTTCC 3536 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||||| ||||||||||| ||||| |||||||||||||| |||||| ||| Sbjct 3537 TGCAAAGATTAGGCGCTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATTTTTGCCTT 3596 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | | ||| | ||||| | || | || | || || || || ||||| Sbjct 3597 CACGTTCTCAATTGAATCAGAAGACTCTACATCTAAAGTTATCGTCTTTCCTGTAAGAGT 3656 Query 131217 TTTTACGAAAATCTGCAT 131234 || || ||||| ||||| Sbjct 3657 CTTAACAAAAATTTGCAT 3674 >seq1581 Length=69860 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 || || || ||||||||||| || || ||| | | | | | || ||||||||||| || Sbjct 28578 GTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA-TCTTCTAGCTGCTTTCC 28636 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | |||||||| || ||||| |||||||||||||| |||||| ||| Sbjct 28637 TGCAAAGATAAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGGATTTTAGCCTT 28696 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | | ||| | ||||| | ||| | ||||| || || || || ||||| Sbjct 28697 TACATTCTCAATTGAATCAGAAGACTCTACGTCTAAGGTAATTGTCTTTCCTGTGAGAGT 28756 Query 131217 TTTTACGAAAATCTGCAT 131234 || || || || ||||| Sbjct 28757 CTTAACAAAGATTTGCAT 28774 >seq2223 Length=42303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| ||||| |||||||| || || ||| | || || || || |||||| Sbjct 22569 GTTGACTCTTTTTGGATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCAAGTTGTTTGCCT 22628 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || ||||||| | || ||||| ||||| || ||||||||||| |||||| ||| Sbjct 22629 GCAAAGATTAACCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTG 22688 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | |||| | ||||||| || | ||| | || || || || || ||| Sbjct 22689 ACATTCTCGATGCTATCTGAAGACTCGACATCTAAGGTGATTGTCTTGCCTGTGAGTGTT 22748 Query 131218 TTTACGAAAATCTGCATG 131235 || ||||| ||||||||| Sbjct 22749 TTAACGAAGATCTGCATG 22766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || ||||| || | || ||||| |||||||||||||| || || ||| | || Sbjct 22098 AGAACTAAGTGCAATGTTGACTCTTTTTGAATGTTGTAGTCAGCCAAGGTTCTTCCATCT 22157 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 ||||| || ||||| ||| |||| | | || || || ||||| || |||||||| || Sbjct 22158 TCTAGTTGTTTGCCAGCGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCT 22217 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 |||||| |||| | | | || | | || | ||| || | ||| | || | ||| Sbjct 22218 TGGATTTT-GGCTTTAACGTTTTCAATGCTGTCTGAGGATTCAACGTCAAGTGTTATGGT 22276 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || || || ||||| ||||| |||||||| Sbjct 22277 TTTTCCTGTGAGGGTTTTGACGAAGATCTGCAT 22309 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 ||| || | ||| | || || ||||| | || ||||| |||||||| || ||||| || Sbjct 21626 GCCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCAGC 21685 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | | | | | ||||| || ||||| ||||| |||| | | ||||| || || | Sbjct 21686 TAAAGTTCTTCCA-TCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGG 21744 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | ||||||||||| || |||||| |||| | || | | |||| | || || | Sbjct 21745 GAATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATACTATCTGAAGATTCAA 21804 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || |||| ||| || || ||||||||||| Sbjct 21805 CATCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 >seq2459 Length=32074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 || ||||| | ||||| || |||||||||||||| || ||| | | | | | || || Sbjct 25532 ACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCAGCTAAGGTTCTTCCA-TCTTC 25590 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 |||||||| ||||| |||||| |||||||| || ||||| ||||||||||| || Sbjct 25591 AAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 25650 Query 131145 GATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 |||||| ||| || | | ||| | | ||| | ||||| | || | || | || | Sbjct 25651 GATTTT-TGCTTTTACGTTCTCAATTGAATCAGAAGACTCTACATCTAAAGTTATCGTCT 25709 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || || || || || ||||| ||||| Sbjct 25710 TTCCTGTGAGTGTCTTAACAAAAATTTGCAT 25740 >seq156 Length=23114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 || ||||| | || || || ||||||||||| || || ||| | | | | | || || Sbjct 22157 ACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA-TCTTC 22215 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 ||||||||| ||||| |||| | ||| ||||| || ||||| |||||||||||||| | Sbjct 22216 TAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTC-TT 22274 Query 131145 GATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| || || | | ||| | | ||| | || || | || | ||||| || | Sbjct 22275 GAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTACATCTAAGGTAATCGTCT 22334 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || || ||||| || || ||||| ||||| Sbjct 22335 TTCCTGTGAGAGTCTTAACAAAAATTTGCAT 22365 >seq2491 Length=30888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 177/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 145849 TTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACA 145908 ||| |||||| || || || |||||| | || || ||| || || || ||||| Sbjct 4049 TTCATATTTCTCATAAAGTTCTTCAAACTCTTCTCCCCAGACATCAGAAAGTCCAGGACA 3990 Query 145909 CTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATC 145968 | || |||||||||| || |||| | || || | || || | |||||||||||| Sbjct 3989 GTCATTAGGACACATCAACGTCCATTCACCATTTTTTTCAACACGTTTCATAAACAAATC 3930 Query 145969 TGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTTTGCAATCCTCAGCACCCATGTTT 146026 ||| ||||||| || | | ||||| | || ||||| ||||| ||| || || Sbjct 3929 TGGGACCCACAAACCGAAAAATAAGTCTCTTGCCCTTTG--TTCCTCTTTACCAATATTC 3872 Query 146027 CGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGG 146086 | ||||| |||| | | | | || || || ||||| ||||| | ||| || || | Sbjct 3871 CTTTTCAACATAAGAAAATCAAAAATATCTGCATGCCAAGGTTCTAAATATACTGCAAAA 3812 Query 146087 GCTCCTTTTCGTTTGCCACC 146106 |||||||||| ||| || || Sbjct 3811 GCTCCTTTTCTTTTCCCCCC 3792 >seq1260 Length=79673 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 131003 ATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT 131062 || ||||||| | || | |||||||||||||| || || || ||||||||||| |||| Sbjct 62404 ATTAGCCACCTCTCAGTCTCAGCACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAAT 62463 Query 131063 CGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCG 131122 | | || | | || |||| ||||||||||| | || | | ||||| || | Sbjct 62464 CAGCAAGTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAG 62523 Query 131123 GAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACT 131182 ||||||| ||||||||||| |||||| || | | || | | | || | || | Sbjct 62524 GAGGGATGCCTTCTTTGTCTTGTATTTTCGCTTTCACATTTTCAATACTGTCTGACGATT 62583 Query 131183 CGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | | || | || | ||||| || |||| ||| || ||||| || ||||| Sbjct 62584 CTACATCTAAAGTTATAGTTTTCCCAGTTAAAGTCTTGACGAATATTTGCAT 62635 >seq1993 Length=52953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | ||| || || ||||||||||||||||| | || || || Sbjct 24296 AGGACTAAATGAAGGGTTGATTCTTTTTGAATGTTGTAATCAGCAAGAGTTCGACCATCT 24237 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || || || || ||| |||| | | || || || || |||||||||||||| || Sbjct 24236 TCAAGTTGTTTACCAGCGAAGATCAGTCTTTGTTGATCAGGGGGGATTCCTTCTTTATCT 24177 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||| | | ||| | | |||| || |||| |||| ||| | ||| Sbjct 24176 TGAATTTTGGCCTTTACGTTCTCAATGCTGTCGGAAGATTCGACATCGAGGGTGATGGTC 24117 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || |||| ||||| ||||| || ||||| Sbjct 24116 TTTCCTGTTAAGGTTTTGACGAAGATTTGCAT 24085 >seq1 Length=265894 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 ||||||||| | | || ||||| || | ||| || |||||||||||||| || || || Sbjct 160392 GCCACCGCGGAGTCTGAGGACTAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCAGC 160333 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | || | || |||| ||||| || ||| |||| | | ||||| || |||| Sbjct 160332 T-AAAGTCCTACCATCTTCTAATTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGAG 160274 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| ||||| ||||| || || ||| | | ||| | | || | ||||| | Sbjct 160273 GGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGCTGTCCGAAGACTCAA 160214 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| ||||| || ||||| Sbjct 160213 CATCGAGGGTGATGGTCTTGCCTGTAAGGGTTTTGACGAATATTTGCAT 160165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471997294379520