Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1417 286 4e-72 >seq1417 Length=75703 Score = 286 bits (316), Expect = 4e-72 Identities = 641/944 (68%), Gaps = 39/944 (4%) Strand=Plus/Plus Query 92782 TTCTTATTCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTC 92841 ||||| |||||| ||| ||| || || || | ||| | |||||||||||||| ||| Sbjct 13624 TTCTTCGCCATAACCCCAGTTTTCTGATAATCACTCACTCTCTTTTCAAAGAAATTCGTC 13683 Query 92842 TTTCCTTCCAAAGATATCGAATTCA-CTAGTGATT-GGATTCTTGGCGTTATAATACTTT 92899 || || | || ||| ||| | || | | | | ||||| | ||||| || ||| Sbjct 13684 TTACCCTGCATAGAAATCATCTCCATCCACTCAAAAGGATTTGCCACTTTATA-TA-TTT 13741 Query 92900 TCACCGATC--AACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCA 92957 || | ||| || | | ||||||||| || | |||||| | || |||||||| | Sbjct 13742 TCTCACATCCTAAAGCAATAAGTAATCTATCCGCAATAAATTCAAGATATTGAGACATAA 13801 Query 92958 AATCACAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGA 93017 |||||||||| | | || |||| ||| || || | || |||| || | Sbjct 13802 GCCTTGAATTCATTCCAATCAATTCAACTGGTAAAGCTTCAGTAATAAACTCTTCTTCAA 13861 Query 93018 TTACAACGGCTTCTTTCAAGATTTCTATTACT--CTACTATTTGGTGGTTTTTGTACGAC 93075 ||| || ||||| | || ||| | | | || || | |||| | || | || | Sbjct 13862 TTATAATAGCTTCACGAATCATATCT-TGAATAACTTCT-TGTGGTAGCTTATTAACAAT 13919 Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAAC 93133 | | | || | || || ||||| || |||||||||||||| |||| ||||| | Sbjct 13920 GTGAGTATATAACAAACAAGCAAAATCTGTATGTAAACCTTCATCTCTACTGATA--AGT 13977 Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||| ||||| | ||| || | ||| ||||| || ||||| || || ||| | Sbjct 13978 TCATTAGAAAATGTGAGACCAGGCATAAGTGAACGTTTTTTCAGCCAGAAAATCGAACAA 14037 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 || || |||||||| || |||||||| || || ||| |||| |||| | || ||||||| Sbjct 14038 AAGCTCCCAGAAAAGAAAATACCTTCAACTGCAGCATATGCTACAAGTCTTTGGGCAAAA 14097 Query 93254 TTTGCGGAATTACTGCTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA--- 93307 ||| |||||| |||||||| ||||||||||| |||||||| ||||| Sbjct 14098 CATGC------ACTGCTATCAATCCATTTCAAAGCCCAATCAGCTTTTTTTTTAATCGAT 14151 Query 93308 -CAAGGTAGTGTTTCGATAGCGTTAA---ATAGGTAATCTCGCTCGTCCGAATCTCGTAT 93363 ||| || ||||| || || |||| ||| || | | || | | |||| ||| Sbjct 14152 TCAAAGT--TGTTT--ATTGCATTAAGTAATATGTTTTTT---TCTTGAGGATCTTTTAT 14204 Query 93364 GTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAA 93423 || || |||||||||| |||||| | ||| || | || ||||| |||||||| || Sbjct 14205 ATACGTGTCGATTAACATAGAATAAGTCTCACTGTGTATGTTTTCCATAGCAATTTGAAA 14264 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 ||| || || || |||||| | ||| || ||||| ||||||| | ||||| Sbjct 14265 TCCATAAAATGCTCGAGCTTCAGGGATTTGAACTTCACAGAAAAATCTACTGGCAAGATT 14324 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 ||| ||| || ||||| || |||||||||||||| || | || ||||||||||| | Sbjct 14325 TTCTAAGACAATTCCATCAGAAGCTGCAAAAAAAGCTAAAACATATTTTATAAAATGCCT 14384 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGAC 93603 |||||||| | | | |||||||| |||||||| | | ||| | ||||| Sbjct 14385 TTCATCATCAGTCAATGTTTCCCAATCTCTTAGATCTTGAGCCAAATCAAGCTCTTCTGA 14444 Query 93604 AGTCCAAAACGATGCTTC-TGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTG 93662 ||||||||| |||||| ||| |||||||||||| ||| || || | ||||| || | Sbjct 14445 AGTCCAAAAACTTGCTTCATGC-TTTTTGTACATAGTCCAGATATCGTTGTATTGTATCG 14503 Query 93663 GAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | || ||||| || || | ||||| ||| |||| | |||||| Sbjct 14504 GGAACATGACGAATCGGCTTGGGTTTTCTCTTAGAAGAGGCTCT 14547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556842507122720