Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1260 120 3e-22 seq1993 113 4e-20 seq1753 104 2e-17 seq2191 95.1 1e-14 seq156 95.1 1e-14 seq1 93.3 4e-14 seq279 87.8 2e-12 seq2223 84.2 2e-11 seq1008 84.2 2e-11 >seq1260 Length=79673 Score = 120 bits (132), Expect = 3e-22 Identities = 112/141 (79%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||||||| | || ||||| ||||| ||||||| ||| ||||| ||||| ||| Sbjct 62542 GACAAAGAAGGCATCCCTCCTGATCAGCAAAGACTTATTTTTGCAGGCAAGCAATTAGAA 62483 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| | ||| | || |||||||| || ||||||||||| ||||||||||||||| || Sbjct 62482 GATGGGAGAACACTTGCTGATTATAACATTCAAAAAGAATCAACACTACATTTAGTGCTG 62423 Query 111400 CGTCTGCGCGGTGGC-AATAA 111419 | ||| | |||||| ||||| Sbjct 62422 AGACTGAGAGGTGGCTAATAA 62402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 |||||||||||| |||| ||||||||||||||||| | ||| ||||| ||||| ||| Sbjct 62998 GACAAAGAAGGCATTCCTCCTGATCAACAAAGGCTTATCTTTGCAGGCAAGCAATTAGAA 62939 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||| | ||| | || ||||| || || |||||||| || || || || ||||| Sbjct 62938 GATGGAAGAACCCTTGCTGATTACAACATCCAAAAAGAGTCAACTCTTCACTTAGT 62883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 || |||||||| |||| ||||| ||||| ||||||| || || ||||| ||||| Sbjct 62770 GATAAAGAAGGGATTCCACCAGATCAGCAAAGACTTATTTTCGCTGGAAAACAGTTGGAG 62711 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||| | |||| | || || ||||| || ||||||||||| ||| | |||||||| Sbjct 62710 GATGGAAGAACTCTTGCTGACTATAACATCCAAAAAGAATCAACATTGCATTTAGT 62655 >seq1993 Length=52953 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| |||| ||||| || || || | || ||| | Sbjct 24313 ATGCAAATCTTCGTCAAAACTCTGACAGGCAAGACTATAACTTTAGATGTTGAATCATCA 24372 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| || |||||||| | || |||||| Sbjct 24373 GATAGTATTGAAAACGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCTCCAGATCAA 24432 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| ||||| | ||| ||||||||||| |||||| || ||| | || ||||||||| Sbjct 24433 CAAAGACTTATATTTGCTGGCAAACAATTAGAAGATGGTAGAACACTTGCTGATTATAAT 24492 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || ||||||||||| || || |||||||| || Sbjct 24493 ATTCAAAAAGAATCAACTCTTCATTTAGTTTT 24524 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||||||||| || |||| || ||||| ||||| |||| ||| | Sbjct 24540 AATGCAGATTTTTGTCAAGACATTGACTGGAAAAACTATTACTTTGGATGTTGAATCTTC 24599 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | || ||| |||||| || |||||||| | || ||||| Sbjct 24600 TGATAGTATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAAGGAATCCCTCCTGATCA 24659 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || ||||||| ||| || ||||| || |||||| || ||| |||| |||||||| Sbjct 24660 ACAGAGACTTATTTTTGCTGGTAAACAGTTAGAAGATGGTAGGACTTTGGCTGATTATAA 24719 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 || |||||||| || ||||| ||||| || Sbjct 24720 CATTCAAAAAGAGTCAACACTTCATTTGGT 24749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| || |||||||| | || || || ||||| ||| | || ||| | Sbjct 24084 AATGCAAATCTTCGTCAAAACCTTAACAGGAAAGACCATCACCCTCGATGTCGAATCTTC 24143 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| ||| | ||||| |||||| || |||||||| | ||| ||||| Sbjct 24144 CGACAGCATTGAGAACGTAAAGGCCAAAATTCAAGATAAAGAAGGAATCCCCCCTGATCA 24203 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||| || || | || || |||||| | |||||| | |||| | || ||||| || Sbjct 24204 ACAAAGACTGATCTTCGCTGGTAAACAACTTGAAGATGGTCGAACTCTTGCTGATTACAA 24263 Query 111366 TATACAAAAAGAATCTACACTACATTTAGT 111395 || ||||||||||| || || |||||||| Sbjct 24264 CATTCAAAAAGAATCAACCCTTCATTTAGT 24293 >seq1753 Length=65450 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| || |||||||| ||||| || |||||||||||||| | || || ||| Sbjct 9529 AAAATTCAAGATAAAGAAGGTATTCCCCCAGACCAACAAAGGCTTATCTTCGCTGGAAAA 9588 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 |||||||||||| || ||| |||| |||||||| || |||||||| || ||| ||||| Sbjct 9589 CAATTGGAAGATGGTAGGACTTTGGCTGATTATAACATCCAAAAAGAGTCAACATTACAT 9648 Query 111391 TTAGT 111395 || || Sbjct 9649 TTGGT 9653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || ||||| ||||| | || ||| | | Sbjct 10129 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAAACTATTACTCTTGATGTGGAGTCATCC 10188 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || ||| ||||| || |||||||| |||| ||||| Sbjct 10189 GATAGTATTGAAAATGTGAAAGCTAAAATACAAGATAAAGAAGGAATTCCTCCTGATCAG 10248 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| ||||| | ||| || || ||| | |||||| | ||| | || ||||||||| Sbjct 10249 CAAAGACTTATATTTGCAGGAAAGCAACTTGAAGATGGAAGAACCTTAGCTGATTATAAT 10308 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC-AATAA 111419 || || ||||| || || || |||||||| | | || | |||||| ||||| Sbjct 10309 ATTCAGAAAGAGTCGACTCTTCATTTAGTTCTTAGACTTAGAGGTGGCTAATAA 10362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| | ||| Sbjct 9310 GACAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATTTTTGCTGGCAAGCAACTTGAA 9369 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||| | || | || || || || || |||||||| || ||| |||| ||||| Sbjct 9370 GATGGAAGGACCTTAGCTGACTACAACATTCAAAAAGAGTCAACATTACACTTAGT 9425 >seq2191 Length=126925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || | || |||||||| || || | || || | Sbjct 117643 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAAACAATAACTCTAGATGTAGAGTCTTCA 117702 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||||||| || |||||||| ||||| ||||| Sbjct 117703 GATAGTATTGAAAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAG 117762 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || ||||||| ||| ||||| ||||| |||||| | ||| | || || ||||| Sbjct 117763 CAGAGACTTATTTTTGCAGGCAAGCAATTAGAAGATGGGAGAACACTTGCAGACTATAAC 117822 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || || ||||| || ||||||||||| ||||| Sbjct 117823 ATCCAGAAAGAGTCAACACTACATTTGGTGTT 117854 >seq156 Length=23114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 111182 TAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAAC 111241 |||| |||||||||||||| || || | || || || || |||||| | || ||| Sbjct 22370 TAAATATGCAAATTTTTGTTAAGACTCTCACAGGAAAGACGATTACCTTAGATGTAGAAT 22311 Query 111242 CCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111301 | ||||| ||| | |||||| |||||| ||||||||||| |||| | Sbjct 22310 CTTCTGATTCAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATTCCTCCTG 22251 Query 111302 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111361 |||| ||| | ||||| | ||| || || || | |||||| | ||| | || || | Sbjct 22250 ATCAGCAACGTCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGAAGAACCTTAGCAGACT 22191 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||| || ||||||||||| || || ||||| || || Sbjct 22190 ATAACATTCAAAAAGAATCAACTCTTCATTTGGTATT 22154 >seq1 Length=265894 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || |||||||| || |||| ||| | Sbjct 160621 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATCACTTTGGATGTTGAATCATCT 160680 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| | || ||| || ||| || || ||||| | ||| |||||| Sbjct 160681 GACAGCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATCCCCCCTGATCAA 160740 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || ||||||| ||| || ||||||||||||||| | ||| | || || ||||| Sbjct 160741 CAGAGACTTATTTTTGCCGGGAAACAATTGGAAGATGGCAGAACCTTAGCTGACTATAAC 160800 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC-AATAAATAA 111423 || || || ||||| ||||| |||||||| | | || || |||||| | | ||||| Sbjct 160801 ATTCAGAAGGAATCAACACTCCATTTAGTCCTCAGACTTCGTGGTGGCTAGTTAATAA 160858 >seq279 Length=100375 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 111248 ATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAAC 111307 || ||||| | || |||||| |||||||| ||||||||||| |||| | || || | Sbjct 74106 ATACTGTTAGGCAAGTAAAAGAAAAAATTAAAGACAAAGAAGGAATTCCAGAAGACCAGC 74047 Query 111308 AAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATA 111367 ||||||| | | ||| ||||| ||| | |||||| || || | | ||| ||| ||| Sbjct 74046 AAAGGCTACTATTTGCAGGCAAGCAACTTGAAGATGATAGAAATGTTTACGAATATGATA 73987 Query 111368 TACAAAAAGAATCTAC 111383 | ||||||||||| || Sbjct 73986 TTCAAAAAGAATCCAC 73971 >seq2223 Length=42303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 || |||||||| |||| || |||||||||||||| | || ||||||||| | ||| Sbjct 21988 GATAAAGAAGGTATTCCTCCAGACCAACAAAGGCTTATCTTCGCAGGCAAACAACTAGAA 21929 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||| | || |||| ||||||||||| |||||||| || ||| | || ||||| Sbjct 21928 GATGGAAGGACATTGGCTGATTATAATATCCAAAAAGAGTCGACATTGCACTTAGT 21873 >seq1008 Length=7107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||||||||| |||| ||||||||||||||||||| ||| ||||| ||| | ||| Sbjct 6967 GACAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATTTTTGCTGGCAAGCAACTTGAA 7026 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGT 111395 ||| | || | || || || || || |||||||| || ||| |||| ||||| Sbjct 7027 GATGGAAGGACCTTAGCAGACTACAACATTCAAAAAGAGTCAACATTACACTTAGT 7082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423026450557600