Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1993 113 3e-20 seq2223 96.9 2e-15 seq1 95.1 9e-15 seq1753 93.3 3e-14 seq2191 84.2 2e-11 >seq1993 Length=52953 Score = 113 bits (124), Expect = 3e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | | ||||| |||||||| ||||||||||||||| ||||| Sbjct 24406 GATAAAGAAGGTATCCCTCCAGATCAACAAAGACTTATATTTGCTGGCAAACAATTAGAA 24465 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | ||| | || ||||| |||||||| || ||||| ||||||||| | || ||| Sbjct 24466 GATGGTAGAACACTTGCTGATTATAATATTCAAAAAGAATCAACTCTTCATTTAGTTTTA 24525 Query 22047 CGTTTACGAGGAGGA 22061 | ||| |||| ||| Sbjct 24526 AGATTAAGAGGTGGA 24540 Score = 104 bits (114), Expect = 2e-17 Identities = 188/273 (69%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||||| || || ||||| ||||| |||| ||| | | Sbjct 24540 AATGCAGATTTTTGTCAAGACATTGACTGGAAAAACTATTACTTTGGATGTTGAATCTTC 24599 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || | | | || |||| |||||| |||||||| || | ||| | || Sbjct 24600 TGATAGTATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAAGGAATCCCTCCTGATCA 24659 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||||||| |||||||| ||||| |||||||| | ||| |||| ||||| || Sbjct 24660 ACAGAGACTTATTTTTGCTGGTAAACAGTTAGAAGATGGTAGGACTTTGGCTGATTATAA 24719 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATA-TTAATAAT 22071 ||||| || || || || |||||| |||| || | || |||| || || ||||||| Sbjct 24720 CATTCAAAAAGAGTCAACACTTCATTTGGTTCTAAGATTGAGAGGTGGCTAGTTAATAAG 24779 Query 22072 AAAAACCATAAATATACATTAAATTTTTTATTT 22104 | | | |||| || ||||||||| ||| Sbjct 24780 ATTATTTAGAAATCTA---GAAATTTTTTGTTT 24809 >seq2223 Length=42303 Score = 96.9 bits (106), Expect = 2e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | | ||||| || |||||||| |||||||||||||||||| Sbjct 22444 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATCTTCGCTGGCAAACAACTAGAA 22385 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || ||| |||| || ||||||||||| || || || ||| | || |||| Sbjct 22384 GATGGAAGAACCTTGGCTGACTACAATATTCAAAAAGAGTCAACTTTGCACTTGGT 22329 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | | ||||| || |||||||| |||||||||||||||||| Sbjct 22216 GATAAAGAAGGTATTCCTCCAGATCAACAAAGGCTTATCTTCGCTGGCAAACAACTAGAA 22157 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTAC 22030 ||| || ||| |||| || ||||| ||||| || || || || Sbjct 22156 GATGGAAGAACCTTGGCTGACTACAACATTCAAAAAGAGTCAAC 22113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | ||||||| || |||||||| || ||||||||||||||| Sbjct 21988 GATAAAGAAGGTATTCCTCCAGACCAACAAAGGCTTATCTTCGCAGGCAAACAACTAGAA 21929 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTAC 22030 ||| || || |||| ||||| ||||| || || || || || Sbjct 21928 GATGGAAGGACATTGGCTGATTATAATATCCAAAAAGAGTCGAC 21885 >seq1 Length=265894 Score = 95.1 bits (104), Expect = 9e-15 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | ||| | ||||||||||||||||| ||||| |||||| ||||| Sbjct 160486 GATAAAGAAGGTATCCCTCCTGATCAACAGAGACTTATCTTCGCTGGGAAACAATTAGAA 160545 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 || || ||| | || || ||||| |||||||||||||| || ||||| Sbjct 160546 GACGGAAGAACCCTTGCTGACTACAACATTCAGAAGGAATCCACACTTCA 160595 >seq1753 Length=65450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| ||| | || | ||||| |||||||||||||| || |||||||| || Sbjct 9994 GATAAAGAAGGTATCCCCCCTGATCAACAAAGACTTATCTTTGCAGGAAAACAACTTGAG 10053 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATAT-GGTATT 22045 ||| || |||| |||| |||||||| ||||| ||||| || ||| | ||| | | | || Sbjct 10054 GATGGAAGAACTTTGGCTGATTACAACATTCAAAAGGAGTCAACTTTGCATTTAGTTCTT 10113 Query 22046 ACGTTTACGAGGAGG 22060 | ||| | ||||||| Sbjct 10114 AGGTTGA-GAGGAGG 10127 >seq2191 Length=126925 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || |||||||| || || | || || | || Sbjct 117643 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAAACAATAACTCTAGATGTAGAGTCTTCA 117702 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || | | | || ||||| ||||||| |||||||| || | || | || Sbjct 117703 GATAGTATTGAAAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAG 117762 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||||||||| ||||| ||||| ||| |||||||| | ||| | || || || || Sbjct 117763 CAGAGACTTATTTTTGCAGGCAAGCAATTAGAAGATGGGAGAACACTTGCAGACTATAAC 117822 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 || ||||| || || || || ||| |||| ||| | || |||| || || ||| Sbjct 117823 ATCCAGAAAGAGTCAACACTACATTTGGTGTTAAGATTGAGAGGTGGTTAATAA 117876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358113329710312