Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1993 89.7 6e-13 seq1753 82.4 8e-11 >seq1993 Length=52953 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || |||||||| ||||||||||| ||||| || | || || || || ||||||||||| Sbjct 24275 TCTTTTTGAATGTTGTAATCAGCAAGAGTTCGACCATCTTCAAGTTGTTTACCAGCGAAG 24216 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || |||| || || || | || | | || ||| | ||| |||| | || | | Sbjct 24215 ATCAGTCTTTGTTGATCAGGGGGGATTC-CTTCTTTATCTTGAATTTTGGCCTTTACGTT 24157 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| ||||| ||||||| |||||||| || || |||| || || || Sbjct 24156 CTCAATGCTGTCGGAAGATTCGACATCGAGGGTGATGGTCTTTCCTGTTAAGGTTTTGAC 24097 Query 42197 AAAGATTTGCATT 42209 |||||||||||| Sbjct 24096 GAAGATTTGCATT 24084 >seq1753 Length=65450 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||||||| | | ||||| || || || ||| ||||| || || |||||||| Sbjct 9900 ACCTCCTCTTAATCTAAGAACCAAGTGTAAAGTTGACTCTTTTTGGATGTTATAATCAGC 9841 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || ||||| || ||||| ||||| || | || || || | || Sbjct 9840 CAAAGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAATATAAGCCTTTGTTGATCTGGAGG 9781 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCGCTCGATTCCA 42159 | | || ||| | || |||| | || | ||| || | |||| ||||| | Sbjct 9780 AATAC-CTTCTTTATCTTGGATTTTAGCTTTAACGTTTTCAATGCTGTCTGAGGATTCTA 9722 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | || || || || || ||||| ||||| ||||| || ||||| Sbjct 9721 CATCAAGTGTAATAGTCTTACCAGTTAGAGTCTTGACAAAAATCTGCAT 9673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543194955459520