Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1753 113 4e-20 seq2223 95.1 1e-14 seq1993 93.3 4e-14 seq1008 93.3 4e-14 >seq1753 Length=65450 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | | ||||||||| | |||||||||||||||||||||| || | Sbjct 10127 CCTCCTCTCAACCTAAGAACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCC 10068 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| |||||||| || | | |||| || | ||||| || || || Sbjct 10067 AAAGTTCTTCCATCCTCAAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGG 10008 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||||||||| || |||||| ||| | | ||| | | || | ||||| || Sbjct 10007 ATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACA 9948 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| |||||| ||||| || ||||| Sbjct 9947 TCAAGTGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTC 138464 ||||| |||| ||||||| ||||||||||||||||| ||| | || | || || Sbjct 9425 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCAGCTAAG-GTCCTTCCATCTTC 9367 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| || || | | | || || | ||||| || ||||| |||||||||||||| Sbjct 9366 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 9307 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| ||| | | || | | |||| | ||||| || || | || | ||||| Sbjct 9306 GATTTTAGCTTTGACGTTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 9247 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || || |||||||| Sbjct 9246 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 9217 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| || |||| ||||||| ||||| ||||| || || || ||| | || || Sbjct 9882 AACCAAGTGTAAAGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTTCCATCTTC 9823 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 || ||||| || | | | || || | ||||| || ||||| ||||||||||| || Sbjct 9822 AAGCTGTTTTCCAGCAAATATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 9763 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| ||| | | ||| | | |||| | || || || || | || | || || Sbjct 9762 GATTTTAGCTTTAACGTTTTCAATGCTGTCTGAGGATTCTACATCAAGTGTAATAGTCTT 9703 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||||| || |||||||||||||| Sbjct 9702 ACCAGTTAGAGTCTTGACAAAAATCTGCAT 9673 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||||| ||||||| ||||| ||||| || || || ||| | || || Sbjct 9654 AACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTACCATCTTC 9595 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | |||||| || | |||| || | |||||||| || || ||||||||||| || | Sbjct 9594 CAATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTATC-TT 9536 Query 138525 GATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| | ||| | | ||| | |||| | ||||| || || | || | |||| Sbjct 9535 GAATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTTATAGTTT 9476 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || ||||| ||||| |||||||| Sbjct 9475 TTCCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq2223 Length=42303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||| || ||||||||||| || ||| | || | | || || |||||||| ||| Sbjct 21430 TTGACTCTTTCTGAATGTTGTAATCAGCTAAG-GTTCTCCCATCTTCAAGTTGTTTTCCG 21488 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | | | || || | ||||| || || || || ||||||||||| || || ||| Sbjct 21489 GCAAATATGAGTCTTTGTTGATCAGGGGGAATTCCTTCTTTGTCTTGTATCTTAGCCTTT 21548 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | | | || | |||||||| || | || | ||||| ||||||| ||| Sbjct 21549 ACATTTTCAATGCTATCAGATGACTCCACATCAAGAGTAATAGTTTTTCCAGTCAAAGTC 21608 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || ||||||||||||||| || Sbjct 21609 TTAACAAAAATCTGCATGCCT 21629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 |||||| || | ||||||| ||||||||||||||||| || || | || || Sbjct 22100 AACTAAGTGCAATGTTGACTCTTTTTGAATGTTGTAGTCAGCCAAGGTTCTTCCATCTTC 22159 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 |||||||| || | |||| || | ||||| || ||||| ||||||||||| || Sbjct 22160 TAGTTGTTTGCCAGCGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 22219 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| ||| | | ||| | | |||| | || || || || | || | ||||| Sbjct 22220 GATTTTGGCTTTAACGTTTTCAATGCTGTCTGAGGATTCAACGTCAAGTGTTATGGTTTT 22279 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || || |||||||| Sbjct 22280 TCCTGTGAGGGTTTTGACGAAGATCTGCAT 22309 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| ||||| ||||||||||| || || | || || |||||||| || | Sbjct 22570 TTGACTCTTTTTGGATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCAAGTTGTTTGCCTG 22629 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||||| | |||||||| ||||| |||||||||||||| |||||| ||| | Sbjct 22630 CAAAGATTAACCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGGATTTTAGCTTTGA 22689 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | | | || | ||||| || || | || | || || || || || |||| Sbjct 22690 CATTCTCGATGCTATCTGAAGACTCGACATCTAAGGTGATTGTCTTGCCTGTGAGTGTTT 22749 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 22750 TAACGAAGATCTGCATG 22766 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||| |||||||| |||||||| || || | || || |||||||| || | Sbjct 22342 TTGACTCTTTTTGAATATTGTAGTCAGCCAAGGTTCTTCCATCTTCTAGTTGTTTGCCAG 22401 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | ||||| || ||||| ||||||||||| || |||||| ||| | Sbjct 22402 CGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATTTTGGCTTTAA 22461 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | | | || | || || || || | || | ||||| ||||| || |||| Sbjct 22462 CGTTTTCAATGCTATCTGATGATTCAACGTCAAGTGTTATGGTTTTTCCAGTGAGGGTTT 22521 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 22522 TGACGAAGATCTGCAT 22537 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || |||||||| || | |||| || | |||||||| ||||| ||||||||||| Sbjct 21927 TCTTCTAGTTGTTTGCCTGCGAAGATAAGCCTTTGTTGGTCTGGAGGAATACCTTCTTTA 21986 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || |||||| ||| | | ||| | | |||| | || || || || | ||| | Sbjct 21987 TCTTGGATTTTAGCTTTAACGTTTTCGATGCTGTCTGAGGATTCAACGTCAAGCGTTATG 22046 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| ||||| || ||||| || || |||||||| Sbjct 22047 GTTTTTCCAGTGAGGGTTTTGACGAAGATCTGCAT 22081 >seq1993 Length=52953 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 |||| |||| ||| | | ||| ||||| | ||||||| ||||||||||| || || Sbjct 24769 AGCCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAG 24710 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 || ||| | || || | |||||||| | | | || || | |||||| || |||| Sbjct 24709 CCAAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAG 24650 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCC 138564 | || |||||||| || ||| |||| | ||||| | ||| | | || | || || Sbjct 24649 GGATTCCTTCTTTATC-CTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCA 24591 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | ||||| ||||||| || || |||||||||||||| Sbjct 24590 ACATCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 >seq1008 Length=7107 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTC 138464 ||||| |||| ||||||| ||||||||||||||||| ||| | || | || || Sbjct 7082 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCTGCTAAG-GTCCTTCCATCTTC 7024 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||| || || | | | || || | ||||| || ||||| |||||||||||||| Sbjct 7023 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 6964 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 |||||| ||| | | || | | |||| | ||||| || || | || | ||||| Sbjct 6963 GATTTTAGCTTTGACATTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 6904 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || ||||| || || |||||||| Sbjct 6903 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 6874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496246097780160