Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1993 89.7 5e-13 seq1753 87.8 2e-12 seq2459 86.0 6e-12 seq2223 82.4 7e-11 >seq1993 Length=52953 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| | |||||||| | || |||||||||||||| || ||||| || Sbjct 24767 CCACCTCTCAATCTTAGAACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCC 24708 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| |||| |||||| ||||| | || | || ||| ||||| ||||| Sbjct 24707 AAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGG 24648 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || ||| |||||| || | | ||| | | || | | || || Sbjct 24647 ATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACA 24588 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || |||| || || |||||||||||||| Sbjct 24587 TCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||||| | || ||||| | || || ||||||||||| |||||||| | Sbjct 24311 CCGCCACGTAATCTGAGGACTAAATGAAGGGTTGATTCTTTTTGAATGTTGTAATCAGCA 24252 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || ||||| |||||| |||||| || || ||||| || || Sbjct 24251 AGAGTTCGACCATCTTCAAGTTGTTTACCAGCGAAGATCAGTCTTTGTTGATCAGGGGGG 24192 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || || || ||||| ||| | | || | | |||| | | ||||| Sbjct 24191 ATTCCTTCTTTATCTTGAATTTTGGCCTTTACGTTCTCAATGCTGTCGGAAGATTCGACA 24132 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || | ||||| || || || ||||| Sbjct 24131 TCGAGGGTGATGGTCTTTCCTGTTAAGGTTTTGACGAAGATTTGCAT 24085 >seq1753 Length=65450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||||| || ||||||||||| || || ||||| ||| || | | ||| || Sbjct 9653 ACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTACCATCTTCC 9594 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||||||||| |||| | | || || || || || || || || || | | || Sbjct 9593 AATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTAT-CTTG 9535 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| || |||| | ||| | |||| | | |||||| || | || | ||||| Sbjct 9534 AATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTTATAGTTTT 9475 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| |||||||| Sbjct 9474 TCCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq2459 Length=32074 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | ||||| || |||||||| | || || ||||||||||| ||||| || Sbjct 25511 GCACCACCTCTTAATCTTAAGACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCA 25570 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || | ||| || ||||| ||||| || |||| | ||||||||||| ||| Sbjct 25571 GCTAAGGTTCTTCCATCTTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGA 25630 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || || || |||||| ||| || | | || | | || | | ||| Sbjct 25631 GGAATTCCTTCTTTATCTTGGATTTT-TGCTTTTACGTTCTCAATTGAATCAGAAGACTC 25689 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | ||| || || || || || || |||||||| ||||| Sbjct 25690 TACATCTAAAGTTATCGTCTTTCCTGTGAGTGTCTTAACAAAAATTTGCAT 25740 >seq2223 Length=42303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||||||||| || ||||| || ||| || | ||| || Sbjct 22557 ACCAAGTGCAAAGTTGACTCTTTTTGGATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCA 22616 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| || || |||| || | || || || ||||| || || || ||||| | Sbjct 22617 AGTTGTTTGCCTGCAAAGATTAACCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGG 22676 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| |||| | |||| | | || | | |||||| || | ||| | || ||| Sbjct 22677 ATTTTAGCTTTGACATTCTCGATGCTATCTGAAGACTCGACATCTAAGGTGATTGTCTTG 22736 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || ||||| || || ||||||||| Sbjct 22737 CCTGTGAGTGTTTTAACGAAGATCTGCATG 22766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475485179798720