Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1260 91.5 1e-13 seq2223 89.7 4e-13 seq1993 87.8 1e-12 >seq1260 Length=79673 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| || ||||| | || ||||||||| || |||||||| || Sbjct 62408 GCCACCTCTCAGTCTCAGCACTAAATGTAGTGTTGATTCTTTTTGAATGTTATAATCAGC 62467 Query 39552 CAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | |||| ||| || ||||| || || ||||||| | | |||||||| | Sbjct 62468 AA----GTGTTCTCCCATCTTCTAATTGCTTGCCTGCAAAAATAAGTCTTTGCTGATCAG 62523 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | |||||||||||| |||||| ||| || || ||| |||||| Sbjct 62524 GAGGGATGCCTTCTTTGTCTTGTATTTTCGCTTTCACATTTTCAATAC--TGTCTGACGA 62581 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || ||||| || ||||| || |||||||| || ||||| || ||||| Sbjct 62582 TTCTACATCTAAAGTTATAGTTTTCCCAGTTAAAGTCTTGACGAATATTTGCAT 62635 >seq2223 Length=42303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| ||| | || ||||||||||| || |||||||| ||||||||||| || Sbjct 21626 GCCTCCTCTCAATCTAAGAACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCAGC 21685 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | | |||| || | ||| || || |||| || | | |||||||| | ||| Sbjct 21686 TAAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGGG 21745 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||||| || ||||| ||| || ||| ||| | |||| ||| Sbjct 21746 AATTCCTTCTTTATCTTGGATTTTGGCTTTGACATTTTCGATAC--TATCTGAAGATTCA 21803 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || ||||| || |||||||| || || || |||||||| Sbjct 21804 ACATCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 >seq1993 Length=52953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTT--TCTTTTTGTATATTATAATCG 39549 ||| |||| ||| | || |||||||| ||||| | |||||||| || |||||||| Sbjct 24768 GCCACCTCTCAATCTTAGAACCAAATG--AAGTGTTGACTCTTTTTGAATGTTATAATCA 24711 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 |||||| | |||| || || ||||| || ||||||| | | ||| ||||| | Sbjct 24710 GCCAAAGTCCTACCATCTTCTAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGA 24651 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||| || ||||| ||||| | || |||| | | | || Sbjct 24650 GGGATTCCTTCTTTATCCTGAATTTTCGCTTTAACATTTTCAATACTAT--CAGAAGATT 24593 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||||||||| ||||| || || || || || || || |||||||| Sbjct 24592 CAACATCCAAAGTAATAGTTTTTCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347358474185924