Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 156 5e-33 >seq1 Length=265894 Score = 156 bits (172), Expect = 5e-33 Identities = 293/427 (69%), Gaps = 14/427 (3%) Strand=Plus/Minus Query 154710 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATG 154769 |||| |||||||||||| ||| ||||| ||||| || ||||| || | || | ||| Sbjct 156538 AGAACTGTATGTTTGATTCCAACATCAGCTCATGGGACAAATCCAGCAACAGCAGCAATG 156479 Query 154770 GCAGGGATGAAAGTTGT---AGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAA 154826 || |||||| || || || || | || ||| | || ||||| || || Sbjct 156478 GCTGGGATGTCTGTAGTGCCAGTTGCC---TGCGATAAATCAGGGAACATTTCAATAGAA 156422 Query 154827 GATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGTATTATGATTAC 154882 ||||| | | |||||| | ||| || || || | || ||| | ||| |||| Sbjct 156421 GATCTGAAAATCAAAGCAGAAAAGCATAAAAACGATTTAGGTG-CAT---TAATGGTTAC 156366 Query 154883 ATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCA 154942 ||| ||||| || ||||| |||||||||| | ||| | || | | || ||||| Sbjct 156365 ATATCCATCAACTCATGGAGTATTTGAAAGTGGTATTGTTGAAGTAATTGATATAGTTCA 156306 Query 154943 TGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGC 155002 | | |||||||||| |||||| | ||||| |||||| | |||||||| ||||| || | Sbjct 156305 TCATTATGGTGGTCAAGTATATATGGATGGGGCAAATATGAATGCACAAGTAGGTTTAAC 156246 Query 155003 AAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTAT 155062 | ||| | | ||| || |||||||||||| |||| |||| ||||| || ||| Sbjct 156245 ATCTCCAGGACATATTGGCGCTGATGTATGTCATTTAAATCTACACAAAACTTTTGCTAT 156186 Query 155063 TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACC 155122 || ||||| ||||| ||||| || | ||||| || ||||| | ||| | ||||| Sbjct 156185 ACCTCATGGTGGTGGTGGTCCAGGTATGGGTCCAATTGGTGTCAGAGCTCATTTAACACC 156126 Query 155123 ATTTGTA 155129 |||| || Sbjct 156125 ATTTTTA 156119 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 153215 AGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAG 153274 |||||| ||||| || ||| || || || ||| |||| ||| | | || || Sbjct 158045 AGGATATTATGGTACTTATACTCCACCTGTAATATTAAGAAATGTTACTCAAAACCCAGC 157986 Query 153275 TTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTT 153334 ||||| || || || || || ||||||||||| ||||| || |||||| | ||| ||| Sbjct 157985 ATGGTATACTTCATATACCCCATATCAAGCTGAAATATCCCAAGGAAGACTTGAAAGTTT 157926 Query 153335 ATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCT 153394 | | ||| ||||| | ||| || | || |||||||| |||| || || ||| | Sbjct 157925 ACTTGTTTATCAAACTATGGTCAGTGATTTGACTGGATTACCTGTAGCTAATGCTTCTTT 157866 Query 153395 ATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT 153432 ||||||||| |||| || | ||| ||||| || ||||| Sbjct 157865 ATTAGATGAGTCAACAGCTGGAGCTGAAGCTATGGCTAT 157827 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/274 (67%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| | || ||||||| || || || ||||| || || ||| | | Sbjct 157495 CAGAGGTTTGGAGTGCCGATGGGATTCGGTGGACCACATGCAGCTTTTTTTAGTGGTAAA 157436 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAA--G 153885 || || ||| ||||| || ||||| || ||| | || || |||| | | ||| | Sbjct 157435 GAAGAGCATATAAGAAAAATGCCTGGGAGGATTATTGGG--GTAAGTAAAGATAGAATTG 157378 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 || ||||| || | | | ||||| | ||||| ||||| || ||||| |||| Sbjct 157377 GTGGAGTTGCATATAGGATGACTATGCAGACCCGTGAGCAACATATAAGAAGAGAAAAAG 157318 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005 | | || || || ||||||||||| || | | || |||||| | || || ||| | | Sbjct 157317 CTTCAAGCAATATATGCACAGCTCAAGCTTTATTAGCAAATATGGCAGGTTTATATTCTG 157258 Query 154006 CATATCATGGTGCAGATGGACTACATGCTATAGC 154039 |||||||||| | || || || | ||||||| Sbjct 157257 TATATCATGGTCCTGAAGGTTTAAAGTCTATAGC 157224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579193772859520