Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 >seq1 Length=265894 Score = 181 bits (200), Expect = 1e-40 Identities = 481/725 (66%), Gaps = 26/725 (4%) Strand=Plus/Minus Query 159093 AAAAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAA 159152 ||||||| | || |||| ||| |||| | || | ||| |||||||||||||| || Sbjct 156830 AAAAGATATTTCGTTAGCTAATTCTATGATACCTTTAGGTTCATGTACTATGAAACTTAA 156771 Query 159153 CGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATAC 159212 || ||| ||| || | ||| | | | || |||| || | || |||||| | Sbjct 156770 TGCTACATGTGAAATGGTCCCTATTACTTATTCAGGATTTGGGAATATTCACCCACATGC 156711 Query 159213 ACCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTAC-AGAAATGGTTAT 159271 || | |||||| | || ||| ||||| || ||| ||| ||||| | | Sbjct 156710 TCCACAAACACAGACTACAGGGTATATGAAAATGATTAATGGTTTAAGAGAAAAACTCAA 156651 Query 159272 GTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGT 159331 | ||| ||||| |||||| ||||| || ||| |||| || |||| || || | Sbjct 156650 A-GCTATTACAGGATTTGATGAAATATCTTTTCAATCTAATAGTGGGGCACAAGGAGAAT 156592 Query 159332 ATGCAGGACTGTTAGCAATCC--AAGCATACCATCAAGGATCAGG---AGATGATAAAAG 159386 || | || || || |||| | || || |||| |||| || || | || Sbjct 156591 ATTCTGGGTTGATATCAATACGTAATTATT---TCAAACATCATTCACAGTTGC--ATAG 156537 Query 159387 AAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGC 159446 || |||||||||||| ||| ||||| ||||| || ||||| ||| |||||| ||||| Sbjct 156536 AACTGTATGTTTGATTCCAACATCAGCTCATGGGACAAATCCAGCAACAGCAGCAATGGC 156477 Query 159447 AGGGATGAAAGTTGT---AGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGA 159503 |||||| || || || || | || ||| | || ||||| || |||| Sbjct 156476 TGGGATGTCTGTAGTGCCAGTTGCC---TGCGATAAATCAGGGAACATTTCAATAGAAGA 156420 Query 159504 TCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGTATTATGATTACAT 159559 ||| | | |||||| | ||| || || || | || ||| | ||| |||||| Sbjct 156419 TCTGAAAATCAAAGCAGAAAAGCATAAAAACGATTTAGGTG-CAT---TAATGGTTACAT 156364 Query 159560 ATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATG 159619 ||||||| || ||||| |||||||||| || | || | | || |||||| Sbjct 156363 ATCCATCAACTCATGGAGTATTTGAAAGTGGTATTGTTGAAGTAATTGATATAGTTCATC 156304 Query 159620 AGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAA 159679 | |||||||||| |||||| | ||||| |||||| | |||||||| |||||| || || Sbjct 156303 ATTATGGTGGTCAAGTATATATGGATGGGGCAAATATGAATGCACAAGTAGGTTTAACAT 156244 Query 159680 AACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTC 159739 ||| | | ||| || |||||||||||| |||| |||| || || || ||| | Sbjct 156243 CTCCAGGACATATTGGCGCTGATGTATGTCATTTAAATCTACACAAAACTTTTGCTATAC 156184 Query 159740 CACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATCTCACACCAT 159799 | ||||| ||||| ||||| || | ||||| |||||||| | ||| | ||||||| Sbjct 156183 CTCATGGTGGTGGTGGTCCAGGTATGGGTCCAATTGGTGTCAGAGCTCATTTAACACCAT 156124 Query 159800 TTGTA 159804 || || Sbjct 156123 TTTTA 156119 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 157890 AGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAG 157949 |||||| ||||| || || || || || ||| |||| ||| | | || || Sbjct 158045 AGGATATTATGGTACTTATACTCCACCTGTAATATTAAGAAATGTTACTCAAAACCCAGC 157986 Query 157950 TTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTT 158009 ||||| || || || || || ||||||||||| ||||| || |||||| | ||| ||| Sbjct 157985 ATGGTATACTTCATATACCCCATATCAAGCTGAAATATCCCAAGGAAGACTTGAAAGTTT 157926 Query 158010 ATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCT 158069 | | ||| ||||| | ||| || | || ||| |||| |||| || || ||| | Sbjct 157925 ACTTGTTTATCAAACTATGGTCAGTGATTTGACTGGATTACCTGTAGCTAATGCTTCTTT 157866 Query 158070 ATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||||||| |||| || | ||| ||||| ||| Sbjct 157865 ATTAGATGAGTCAACAGCTGGAGCTGAAGCTATG 157832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588031882518080