Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq156 113 3e-20 seq2191 111 1e-19 seq1581 107 1e-18 seq2223 91.5 1e-13 >seq156 Length=23114 Score = 113 bits (124), Expect = 3e-20 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 || || ||||| |||| || |||||| |||||||||||||| | | | ||| | || Sbjct 22151 CTTAATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA 22210 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| ||||| ||||| || || |||||||| || | || | || || ||| Sbjct 22211 TCTTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTG 22270 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || ||| || ||| || || || || || ||| | || ||||| | ||| | Sbjct 22271 TCTTGAATTTTAGCTTTTAC--ATTCTCAATTGAATCAGAAGATTCTACATCTAAGGTAA 22328 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || ||||| ||||||||||| ||||| || |||||||| Sbjct 22329 TCGTCTTTCCTGTGAGAGTCTTAACAAAAATTTGCATATT 22368 >seq2191 Length=126925 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||| || ||||| ||||| | |||| ||| | |||| || Sbjct 117380 ACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCAAGGGTTCTTCCATCTTCT 117321 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || || || ||||| || |||| ||| || || | || | || |||||||| | Sbjct 117320 AATTGCTTGCCTGCAAAGATAAGTCTTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGA 117261 Query 34893 ATCTTCTGTTTGACG-----GATGCTATC-GATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||| ||| ||||||||| ||| | ||||||||| | |||||| Sbjct 117260 ATCTTAGCTTTAACGTTTTCGATGCTATCAGAT------GACTCAACATCTAAGGTTATT 117207 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || ||||| ||||| || || || |||||||||||||| Sbjct 117206 GTCTTTCCTGTGAGTGTTTTAACGAAGATCTGCATATT 117169 >seq1581 Length=69860 Score = 107 bits (118), Expect = 1e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 || || |||||||||| || |||||| |||||||||||||| | | | ||| | || Sbjct 28560 CTTAATACCAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCA 28619 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| ||||| ||||| || || || ||||| || | || | || || ||| Sbjct 28620 TCTTCTAGCTGCTTTCCTGCAAAGATAAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTG 28679 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944 || || || || || || || || || ||| | ||| || || | ||| | Sbjct 28680 TCTTGGATTTTAGCCTTTAC--ATTCTCAATTGAATCAGAAGACTCTACGTCTAAGGTAA 28737 Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || ||||| ||||||||||| |||||||| |||||||| Sbjct 28738 TTGTCTTTCCTGTGAGAGTCTTAACAAAGATTTGCATATT 28777 >seq2223 Length=42303 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || |||||||||||||| || || | | | ||| |||| || Sbjct 21416 AACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCTCCCATCTTC 21475 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||||||||| |||| ||| || || | || | || || ||||| Sbjct 21476 AAGTTGTTTTCCGGCAAATATGAGTCTTTGTTGATCAGGGGGAATTCCTTCTTTGTCTTG 21535 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || || | | || ||| | ||| ||||| | || || ||||| Sbjct 21536 TATCTTAGCCTTTACATTTTCAATGCTATCAGATGACTCCACATCAAGAGTAATAGTTTT 21595 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||| ||||| |||||||| Sbjct 21596 TCCAGTCAAAGTCTTAACAAAAATCTGCAT 21625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623202391584