Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2223 107 1e-18 seq1993 102 6e-17 seq1753 93.3 3e-14 >seq2223 Length=42303 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| ||||| |||||||||| || ||| | || || Sbjct 21417 ACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCTCCCATCTTCA 21476 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || ||||||||||| |||| |||||||| | ||||| || || ||||| Sbjct 21477 AGTTGTTTTCCGGCAAATATGAGTCTTTGTTGATCAGGGGGAATTCCTTCTTTGTCTTGT 21536 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | || || | |||||| || | ||||| |||||| Sbjct 21537 ATCTTAGCCTTTACATTTTCAATGCTATCAGATGACTCCACATCAAGAGTAATAGTTTTT 21596 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||||||||| Sbjct 21597 CCAGTCAAAGTCTTAACAAAAATCTGCAT 21625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||||||||||||||| ||||||| || | ||| | || || Sbjct 21645 ACCAAATGCAATGTTGACTCTTTTTGAATATTATAATCAGCTAAAGTTCTTCCATCCTCA 21704 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| || |||| || ||||| | ||||| || || || || Sbjct 21705 AGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGGGAATTCCTTCTTTATCTTGG 21764 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | ||||| | || || || | || || |||||| Sbjct 21765 ATTTTGGCTTTGACATTTTCGATACTATCTGAAGATTCAACATCAAGTGTGATAGTTTTT 21824 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || ||||| || ||||||||||||||| Sbjct 21825 CCAGTTAAAGTCTTAACAAAAATCTGCATC 21854 >seq1993 Length=52953 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || |||||||||||| || ||||||| | | | | | | || || Sbjct 24749 ACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCCAAAGTCCTACCATCTTCT 24690 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| ||||| ||||| || |||| ||||||||| | || | || || || || | Sbjct 24689 AACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGGATTCCTTCTTTATCCTGA 24630 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || | || || |||| ||||| |||||| Sbjct 24629 ATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACATCCAAAGTAATAGTTTTT 24570 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || |||||||||||||| Sbjct 24569 CCAGTCAATGTCTTGACAAAAATCTGCAT 24541 >seq1753 Length=65450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || |||||| |||||||| ||||||| || ||| | || || Sbjct 10337 ACTAAATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCTAAGGTTCTTCCATCTTCA 10278 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || |||||||| |||| || ||||| | |||| || || || || Sbjct 10277 AGTTGCTTTCCTGCAAATATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGT 10218 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || | |||||| || | ||||| |||||| Sbjct 10217 ATTTTAGCTTTCACATTTTCAATACTATCGGATGACTCCACATCAAGAGTAATAGTTTTT 10158 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || |||||||||||||| Sbjct 10157 CCAGTCAAAGTCTTAACAAAAATCTGCAT 10129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380925399044844