Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1 159 4e-34 >seq1 Length=265894 Score = 159 bits (176), Expect = 4e-34 Identities = 473/721 (66%), Gaps = 20/721 (3%) Strand=Plus/Plus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || ||||||||| | ||| | |||||||| ||||| | || ||||| ||||| || Sbjct 156119 TAAAAATGGTGTTAAATGAGCTCTGACACCAATTGGACCCATACCTGGACCACCACCACC 156178 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACA 138277 ||| || ||| || || || |||| ||||| |||||||||||| || ||| | | Sbjct 156179 ATGAGGTATAGCAAAAGTTTTGTGTAGATTTAAATGACATACATCAGCGCCAATATGTCC 156238 Query 138278 TGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACC 138337 ||| || || |||||| |||||||| | |||||| ||||| | |||||| |||||||| Sbjct 156239 TGGAGATGTTAAACCTACTTGTGCATTCATATTTGCCCCATCCATATATACTTGACCACC 156298 Query 138338 ATTGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGA 138397 || | |||||| || | | || | || |||||||||| |||||||| || Sbjct 156299 ATAATGATGAACTATATCAATTACTTCAACAATACCACTTTCAAATACTCCATGAGTTGA 156358 Query 138398 TGGATATGTAATCATAATACATGAGAGTTCAAATGTATTCATGAT----TGCTTTCTTCT 138453 ||||||||||| ||| | ||| | | || || || ||| | |||||| | | Sbjct 156359 TGGATATGTAACCATTA---ATG-CACCTAAATCGTTTTTATGCTTTTCTGCTTTGATTT 156414 Query 138454 CTAGATCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACCT---ACAACTTTCA 138510 ||||||| || ||||| || | ||| || | || || || || || Sbjct 156415 TCAGATCTTCTATTGAAATGTTCCCTGATTTATCGCA---GGCAACTGGCACTACAGACA 156471 Query 138511 TTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATA 138570 | || ||||| |||| | || ||||| || ||||| ||||| ||| |||| ||||| Sbjct 156472 TCCCAGCCATTGCTGCTGTTGCTGGATTTGTCCCATGAGCTGATGTTGGAATCAAACATA 156531 Query 138571 CATTTCTTTTATCATCTCCTGATCCTTGATGATATGCTT--GGATTGCTAACAGTCCTGC 138628 || |||| | || || || | ||| || || | |||| || || || | Sbjct 156532 CAGTTCTAT--GCAACTGTGAATGATGTTTGAAATAATTACGTATTGATATCAACCCAGA 156589 Query 138629 ATACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATC 138688 ||| || || |||| || |||| ||| || ||||| |||||| ||||| ||| | Sbjct 156590 ATATTCTCCTTGTGCCCCACTATTAGATTGAAAAGATATTTCATCAAATCCTGTAATAGC 156649 Query 138689 ACATAACCATTTCT-GTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAG 138747 | | ||||| ||| ||| || || || ||| || | |||||| | | Sbjct 156650 -TTTGAGTTTTTCTCTTAAACCATTAATCATTTTCATATACCCTGTAGTCTGTGTTTGTG 156708 Query 138748 GTGTATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTG 138807 | | |||||| || | || ||||| || | | | ||| | || ||| || | Sbjct 156709 GAGCATGTGGGTGAATATTCCCAAATCCTGAATAAGTAATAGGGACCATTTCACATGTAG 156768 Query 138808 CATTTAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTT 138867 |||| |||||||| || || ||| | || | |||| ||| |||| || | ||||| Sbjct 156769 CATTAAGTTTCATAGTACATGAACCTAAAGGTATCATAGAATTAGCTAACGAAATATCTT 156828 Query 138868 T 138868 | Sbjct 156829 T 156829 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| || || ||| | || |||| |||||||||| ||| || || |||| |||||||| Sbjct 157832 CATAGCTTCAGCTCCAGCTGTTGACTCATCTAATAAAGAAGCATTAGCTACAGGTAATCC 157891 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | || ||| | ||||| ||| | |||| ||| | |||||| || ||||| Sbjct 157892 AGTCAAATCACTGACCATAGTTTGATAAACAAGTAAACTTTCAAGTCTTCCTTGGGATAT 157951 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||||| || || || || || ||||| || || | | ||| |||| Sbjct 157952 TTCAGCTTGATATGGGGTATATGAAGTATACCATGCTGGGTTTTGAGTAACATTTCTTAA 158011 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCT 140072 ||| || || || ||| || ||||| |||||| Sbjct 158012 TATTACAGGTGGAGTATAAGTACCATAATATCCT 158045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578979379902560