Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2191 105 4e-18 seq1 98.7 6e-16 seq156 95.1 8e-15 seq1581 91.5 1e-13 seq2223 87.8 1e-12 >seq2191 Length=126925 Score = 105 bits (116), Expect = 4e-18 Identities = 165/235 (70%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || || | || ||||||| ||||| ||| ||| || || ||||| ||||| | Sbjct 117400 TTCCACCTCTGAGTCTGAGGACCAAGTGAAGGGTTGACTCTTTTTGGATGTTGTAGTCAG 117341 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 ||| | | |||| || | |||||| || || ||||| |||| ||| || || | | Sbjct 117340 CAAGGGTTCTTCCATCTTCTAATTGCTTGCCTGCAAAGATAAGTCTTTGTTGATCAGGAG 117281 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACG-----GATGCTATC-GATTCATTGG 34922 | | || |||||||| | || || ||| ||| ||||||||| ||| | Sbjct 117280 GAATGCCTTCCTTGTCTTGAATCTTAGCTTTAACGTTTTCGATGCTATCAGAT------G 117227 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||||| | |||||| |||||||| ||||| || || || ||||||||||| Sbjct 117226 ACTCAACATCTAAGGTTATTGTCTTTCCTGTGAGTGTTTTAACGAAGATCTGCAT 117172 >seq1 Length=265894 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||| | ||||| ||| ||||| |||||||||||||| | || | | || Sbjct 160379 CTGAGGACTAAGTGAAGGGTTGATTCCTTTTGAATGTTATAGTCAGCTAAAGTCCTACCA 160320 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || | |||||||||||||||||| |||| |||||| ||| | || | || |||||| Sbjct 160319 TCTTCTAATTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGAGGGATACCTTCCTTG 160260 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || ||| | || || | ||| ||||| | ||| ||| Sbjct 160259 TCCTGAATCTTGGCCTTCACGTTCTCAATGCTGTCCGAAGACTCAACATCGAGGGTGATG 160200 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 ||||| || || ||||| || || || || ||||| ||| Sbjct 160199 GTCTTGCCTGTAAGGGTTTTGACGAATATTTGCATTATA 160161 >seq156 Length=23114 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || |||||||||||||| | || | | | |||| || || |||||||| || ||| Sbjct 22175 TCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCATCTTCTAGCTGCTTTCCTGCAAAG 22234 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || |||||||| || | || | || || ||||| | ||||| ||| || || Sbjct 22235 ATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTTAC--AT 22292 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || || ||| | || ||||| | ||| || |||||||| ||||| ||||| | Sbjct 22293 TCTCAATTGAATCAGAAGATTCTACATCTAAGGTAATCGTCTTTCCTGTGAGAGTCTTAA 22352 Query 34965 CAAAGATCTGCAT 34977 |||| || ||||| Sbjct 22353 CAAAAATTTGCAT 22365 >seq1581 Length=69860 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || || || |||||||||||||| | || | | | |||| || Sbjct 28566 ACCAAGTGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCTAAGGTTCTTCCATCTTCT 28625 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || |||||||| || ||||| || || ||||| || | || | || || ||||| | Sbjct 28626 AGCTGCTTTCCTGCAAAGATAAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGG 28685 Query 34889 ATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCT 34946 ||||| || || || || || || ||| | ||| || || | ||| || |||| Sbjct 28686 ATTTTAGCCTTTAC--ATTCTCAATTGAATCAGAAGACTCTACGTCTAAGGTAATTGTCT 28743 Query 34947 TTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| ||||| |||||||| ||||| Sbjct 28744 TTCCTGTGAGAGTCTTAACAAAGATTTGCAT 28774 >seq2223 Length=42303 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | || ||||||| ||| | || ||| || || ||||| ||||| | Sbjct 22539 CCTCCTCTAAGTCTGAGGACCAAGTGCAAAGTTGACTCTTTTTGGATGTTGTAGTCAGCC 22598 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | | | |||| || ||||| || || || ||||| | | ||| |||||| | || Sbjct 22599 AAGGTTCTTCCATCTTCAAGTTGTTTGCCTGCAAAGATTAACCTTTGTTGGTCTGGAGGA 22658 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC-AT-TG--GCCTC 34926 | || || ||||| | ||||| |||||| || || |||| | || || | ||| Sbjct 22659 ATACCTTCTTTGTCTTGGATTTTAGCTTTGAC--ATTCT--CGATGCTATCTGAAGACTC 22714 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| | ||| || ||||| || ||||| || || || |||||||||||| Sbjct 22715 GACATCTAAGGTGATTGTCTTGCCTGTGAGTGTTTTAACGAAGATCTGCATG 22766 Score = 86.0 bits (94), Expect = 4e-12 Identities = 163/232 (70%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||||| ||||| || || |||| || |||| || ||| || ||||| ||||| || | Sbjct 21627 CCTCCTCTCAATCTAAGAACCAAATGCAATGTTGA-CTCTTTTTGAATATTATAATCAGC 21685 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 || | | |||| || ||||||||||| || ||||| |||| |||||| || | || Sbjct 21686 TAAAGTTCTTCCATCCTCAAGTTGCTTTCCTGCAAAGATAAGTCTTTGCTGATCAGGGGG 21745 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC-AT-TG--GCCT 34925 | || || || || | ||||| |||||| || | ||||| | || || | | Sbjct 21746 AATTCCTTCTTTATCTTGGATTTTGGCTTTGAC--AT--TTTCGATACTATCTGAAGATT 21801 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||||| || || || ||||| || | ||||| ||||| |||||||| Sbjct 21802 CAACATCAAGTGTGATAGTTTTTCCAGTTAAAGTCTTAACAAAAATCTGCAT 21853 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || || |||| ||||| || ||| ||||||||||| || || | || | | | | || Sbjct 21411 CTAAGAACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCTCCCA 21470 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| |||||||| || || |||| ||| || || | || | || || ||| Sbjct 21471 TCTTCAAGTTGTTTTCCGGCAAATATGAGTCTTTGTTGATCAGGGGGAATTCCTTCTTTG 21530 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||| || || || | | || ||| | ||| ||||||| || || Sbjct 21531 TCTTGTATCTTAGCCTTTACATTTTCAATGCTATCAGATGACTCCACATCAAGAGTAATA 21590 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || | ||||| ||||| ||||||||| Sbjct 21591 GTTTTTCCAGTCAAAGTCTTAACAAAAATCTGCATG 21626 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/220 (68%), Gaps = 10/220 (5%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | || ||| || ||||| || ||||| | | | | | || Sbjct 22323 CTGAGGACCAAGTGCAAAGTTGACTCTTTTTGAATATTGTAGTCAGCCAAGGTTCTTCCA 22382 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || ||||| || || |||||||| || | ||| || ||| | || | || || || Sbjct 22383 TCTTCTAGTTGTTTGCCAGCGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTA 22442 Query 34883 TCGTTTATTTTTTGTTTGACGG-----ATGCTATCGATTCATTGGCCTCGACATCAACGG 34937 || | ||||| ||| ||| |||||||| | ||| | || |||| | Sbjct 22443 TCTTGGATTTTGGCTTTAACGTTTTCAATGCTATCTGATGATT-----CAACGTCAAGTG 22497 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| ||||| |||||||| || || ||||||||||| Sbjct 22498 TTATGGTTTTTCCAGTGAGGGTTTTGACGAAGATCTGCAT 22537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325682368466732