Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2191 107 2e-18 seq1753 107 2e-18 seq1993 105 5e-18 seq2223 98.7 8e-16 seq2459 82.4 6e-11 >seq2191 Length=126925 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | ||||||||||| || || | || ||| || Sbjct 117643 ATGCAAATCTTTGTTAAGACTCTTACAGGCAAAACAATAACTCTAGATGTAGAGTCTTCA 117702 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | | || || ||| ||| ||||||||||| | ||| |||||| Sbjct 117703 GATAGTATTGAAAATGTTAAGGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGATCAG 117762 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||||| ||| || || || | || || | | |||| | || ||||| ||| Sbjct 117763 CAGAGACTTATTTTTGCAGGCAAGCAATTAGAAGATGGGAGAACACTTGCAGACTATAAC 117822 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || || ||||| || | || ||||||| |||||| |||| || Sbjct 117823 ATCCAGAAAGAGTCAACACTACATTTGGTGTTAAGATTGAGAGGTGG 117869 >seq1753 Length=65450 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||||| || || ||||| || || | || ||| || Sbjct 9901 ATGCAAATCTTTGTTAAAACTTTGACTGGAAAAACTATCACACTTGATGTTGAGTCTTCT 9960 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | | | | || ||| || || ||||||||||| | ||| ||||| Sbjct 9961 GATAGTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCCCCTGATCAA 10020 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||| | ||| || ||||| || ||||| | | ||| |||| || |||||| Sbjct 10021 CAAAGACTTATCTTTGCAGGAAAACAACTTGAGGATGGAAGAACTTTGGCTGATTACAAC 10080 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||| || ||||| | || | || ||| |||| || Sbjct 10081 ATTCAAAAGGAGTCAACTTTGCATTTAGTTCTTAGGTTGAGAGGAGG 10127 >seq1993 Length=52953 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 107543 TAAGAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGA 107602 |||||||| || |||| ||||||||||| || || || || ||||| ||||| | || Sbjct 24530 TAAGAGGTGGAA--TGCAGATTTTTGTCAAGACATTGACTGGAAAAACTATTACTTTGGA 24587 Query 107603 AACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGT 107662 || || |||| | | | | || ||| || ||| ||||||||||| | Sbjct 24588 TGTTGAATCTTCTGATAGTATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAAGGAAT 24647 Query 107663 GCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAAT 107722 || ||||| ||||||||||||| ||| ||||||||| | || || | | || | Sbjct 24648 CCCTCCTGATCAACAGAGACTTATTTTTGCTGGTAAACAGTTAGAAGATGGTAGGACTTT 24707 Query 107723 GGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || || ||||||||||| ||||| || | || |||| | |||||| |||| || Sbjct 24708 GGCTGATTATAACATTCAAAAAGAGTCAACACTTCATTTGGTTCTAAGATTGAGAGGTGG 24767 Query 107783 --AAATAATAAAAATATTT 107799 | |||||| | ||||| Sbjct 24768 CTAGTTAATAAGATTATTT 24786 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 |||| ||||||||| || |||||||| |||||||| || ||||| ||| |||| || Sbjct 24079 TTTATAATGCAAATCTTCGTCAAAACCTTAACAGGAAAGACCATCACCCTCGATGTCGAA 24138 Query 107610 GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTG 107669 || ||| | | | | ||||| || ||| ||||||||||| | ||| Sbjct 24139 TCTTCCGACAGCATTGAGAACGTAAAGGCCAAAATTCAAGATAAAGAAGGAATCCCCCCT 24198 Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||| || ||||| || | || |||||||| || || || | ||| | || || Sbjct 24199 GATCAACAAAGACTGATCTTCGCTGGTAAACAACTTGAAGATGGTCGAACTCTTGCTGAT 24258 Query 107730 TACAACATTCAAAAGGAGTCTAC 107752 |||||||||||||| || || || Sbjct 24259 TACAACATTCAAAAAGAATCAAC 24281 >seq2223 Length=42303 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || |||||||| || ||||| || || | || || || Sbjct 21853 ATGCAGATTTTTGTTAAGACTTTAACTGGAAAAACTATCACACTTGATGTTGAATCTTCA 21794 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||| | ||| | || ||| || || ||||||||||| | ||| |||||| Sbjct 21793 GATAGTATCGAAAATGTCAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAG 21734 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||| | ||| || || || || ||||| | | ||| | || || || || Sbjct 21733 CAAAGACTTATCTTTGCAGGAAAGCAACTTGAGGATGGAAGAACTTTAGCTGATTATAAT 21674 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| ||||| || ||||| |||| | |||||| |||| || Sbjct 21673 ATTCAAAAAGAGTCAACATTGCATTTGGTTCTTAGATTGAGAGGAGG 21627 >seq2459 Length=32074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || |||||||||||||| || || | ||||| || || || || | || ||| || Sbjct 25743 AATATGCAAATTTTTGTTAAGACACTCACAGGAAAGACGATAACTTTAGATGTAGAGTCT 25684 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| | | | | |||||| ||| || ||||||||||| | || ||| Sbjct 25683 TCTGATTCAATTGAGAACGTAAAAGCAAAAATCCAAGATAAAGAAGGAATTCCTCCTGAT 25624 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | ||| || || ||||| || || | | ||| | || |||||| Sbjct 25623 CAGCAGCGCCTAATCTTTGCAGGAAAGCAGCTTGAAGATGGAAGAACCTTAGCTGACTAC 25564 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || || | || |||| || ||||| |||| || Sbjct 25563 AACATTCAAAAAGAATCGACTCTCCATTTGGTCTTAAGATTAAGAGGTGG 25514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398864024474692