Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq2134 114 2e-20 seq2617 109 7e-19 seq1096 86.0 8e-12 seq2026 82.4 1e-10 >seq2134 Length=45942 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193755 ATGTATTGTGGGTTTACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTAT 193814 |||||| ||| |||||| || ||| ||||| ||||||| |||| ||||||||| Sbjct 29703 ATGTATAATGGACATACTGGGAATAGACTTGAAGCACAAATTTTCTTAGGACCAACTTAT 29762 Query 193815 TATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTG 193874 ||||| | ||||| ||||||||| | ||||| || ||| ||||| || ||| ||||| Sbjct 29763 TATCAGAGACTTAAGCATATGGTTGATGATAAGATTCATTCTAGAGCTCGTGGTCAAGTT 29822 Query 193875 ACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGA 193934 || ||| ||||||||| | ||| | || |||||| || | |||||||| Sbjct 29823 CAAACATTAACAAGACAACCAACTGAAGGTAGATCAAGAGGTGGTGGGCTTAGATTTGGT 29882 Query 193935 GAAATGGAGAAAGACTGTATTTTAGTTCATGGTGCTACTCAATTCTTGAATGAAAG 193990 |||||||| | || ||||| | ||||| || || || ||||| ||||| Sbjct 29883 GAAATGGAAAGGGATTGTATGATTTCACATGGATCTGCTAGGTTTTTGAAAGAAAG 29938 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/103 (79%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 193014 CCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGA- 193072 |||| ||| |||||| | |||||||| ||||| ||||| || || ||||||||||| Sbjct 28959 CCAAGTGGATGTAATGCAGTGGTTGCTATTGCTTGTTATACAGGCTACAATCAAGAAGAC 29018 Query 193073 -CAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATT 193114 ||||| ||| | ||| || |||||||||| ||||| ||||| Sbjct 29019 TCAGTA--ATTATGAATCAATCTTCTATTGACAGAGGTTTATT 29059 >seq2617 Length=108820 Score = 109 bits (120), Expect = 7e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 193769 TACTGGTAAAAGAATTGAAAATAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAA 193828 |||||| || ||| ||||| ||||||| |||| || ||||||||||| | ||||| Sbjct 21177 TACTGGGAATAGACTTGAAGCACAAATTTTCTTAGGACCGACTTATTATCAAAGACTTAA 21118 Query 193829 ACATATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGACAAGTGACTACT-TTACATC 193887 |||||||||| | |||||||| ||| ||||| || ||| || || ||| ||||| Sbjct 21117 ACATATGGTTGATGATAAAATTCATTCTAGAGCTCGTGGTCAGGTTCAAACTCTTACA-A 21059 Query 193888 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAG 193947 | ||||||| | ||| | || ||| || || |||||||||||||| || || | | Sbjct 21058 GGCAACCAACTGAAGGTAGGTCAAGAGGAGGTGGATTAAGATTTGGAGAGATAGAAAGGG 20999 Query 193948 ACTGTAT 193954 | ||||| Sbjct 20998 ATTGTAT 20992 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/200 (73%), Gaps = 14/200 (7%) Strand=Plus/Minus Query 192926 AACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCCCTTGTTACCAC---AGA 192982 || ||| || || ||||| | | ||||| |||||||||| | |||| || || Sbjct 22022 AATGGATACTTTAGCTCATGTACTTTATTATGCACAAAAACCATTAGTTATGACTAGAGC 21963 Query 192983 TATTGCAAAATTTAA-TAAATTAGACGATTATCCAAATGGTAT-TAATGCTATTGTTGCT 193040 ||| | |||||| || ||| | ||||| || |||| ||||||| | ||| || Sbjct 21962 TATGG---AATTTATGTACTTTAAAGAATTATT--AAGTGTATGTAATGCTGTAGTTACT 21908 Query 193041 ATAGCTTGCTATACTGGTTATAATCAAGAAGA--CAGTATTATTTTAAATAAAGCTTCTA 193098 || ||||||||||| |||||||||||||| || ||||| ||| | ||| || |||||| Sbjct 21907 ATTGCTTGCTATACAGGTTATAATCAAGAGGATTCAGTA--ATTATGAATCAATCTTCTA 21850 Query 193099 TTGAAAGAGGATTATTTGGT 193118 |||| ||||| |||||| || Sbjct 21849 TTGACAGAGGTTTATTTCGT 21830 >seq1096 Length=5945 Score = 86.0 bits (94), Expect = 8e-12 Identities = 174/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 51827 TGTAACACTTGAAGTTGGAGACTTGGTTAAAAGACAATTGATGGATGGTGATGATGTACT 51886 || ||| ||| || ||| || | ||| ||||||| || |||| ||| ||||| | Sbjct 4641 TGAAACCCTTAAAACTGGTGATGTTGTTGAAAGACATATGGCAAATGGCGATTATGTATT 4582 Query 51887 ATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTT-TAAAGTTAAAATTC 51945 ||| ||| | |||||| | | |||| | ||| || || | | | |||||||| || Sbjct 4581 ATTTAATCGTCAACCATCTTTACATAGAATTTCAAT-CATGGCTCATGAAGTTAAAGTTA 4523 Query 51946 --AACCAGTAAAA---ACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGA 52000 ||| | ||| || ||| || ||||| || || | ||| | ||||||||||| Sbjct 4522 TGAACTACAAAACTCTACGTTTTAA-TGAATGTGTCTGT-ACTC---CTTATAATGCTGA 4468 Query 52001 TTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATT 52060 ||||||||| |||||||||||| |||| | || ||| | | | ||| | ||||| | Sbjct 4467 TTTTGATGGAGATGAAATGAATATACACTTACCACAAACTCAAGAAGCAAGAACTGAAAT 4408 Query 52061 ACAAGAATTAA 52071 | ||||||||| Sbjct 4407 AAAAGAATTAA 4397 >seq2026 Length=133535 Score = 82.4 bits (90), Expect = 1e-10 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 193446 CCTGAAATAGGGGATAAATTTTGTTCA-GGAATGGCCCAAAAAGGAACTTGTGGTATGAT 193504 |||||| | |||||||||||| ||||| || |||| | ||||||| | ||| || || Sbjct 9561 CCTGAACTTGGGGATAAATTTAGTTCAAGGCATGGAC-AAAAAGGTGTTGTTGGGATAAT 9503 Query 193505 TTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGT-ACCAGATATTATTATTA 193563 | |||||||||||||||||||| | |||| |||| || ||| | ||||| | Sbjct 9502 TGTACAACAAGAAGATATGCCATTTAATGAACAAGGT-TGGTGTCCTGATTTAATTATGA 9444 Query 193564 ATCCAAATTGTATTCCATCCAGAATGAC 193591 | ||| || || |||| || |||||||| Sbjct 9443 ACCCACATGGTTTTCCTTCTAGAATGAC 9416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635156734415840