Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq2617 105 8e-18 seq2134 102 1e-16 seq1842 93.3 5e-14 seq2248 86.0 8e-12 seq1096 86.0 8e-12 >seq2617 Length=108820 Score = 105 bits (116), Expect = 8e-18 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 193322 TACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 193381 |||||| || | | ||||| ||||||| |||| || |||||||| || | ||||| Sbjct 21177 TACTGGGAATAGACTTGAAGCACAAATTTTCTTAGGACCGACTTATTATCAAAGACTTAA 21118 Query 193382 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATC 193440 ||| |||||| | |||||||| ||| ||||| || ||| || || ||| ||||| Sbjct 21117 ACATATGGTTGATGATAAAATTCATTCTAGAGCTCGTGGTCAGGTTCAAACTCTTACAAG 21058 Query 193441 GACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAG 193500 | ||||||| | ||| | || ||| || || |||||||||||||| || |||| | Sbjct 21057 G-CAACCAACTGAAGGTAGGTCAAGAGGAGGTGGATTAAGATTTGGAGAGATAGAAAGGG 20999 Query 193501 ACTGTAT--TTTAGTCCATGGTGCTACTCAATTCTTAAATGAAAG 193543 | ||||| ||| | ||||| || || || ||||| ||||| Sbjct 20998 ATTGTATGATTTCG--CATGGATCTGCTAGGTTTTTAAAAGAAAG 20956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/171 (74%), Gaps = 14/171 (8%) Strand=Plus/Minus Query 192505 ATTATCCACAAAAACCACTTGTTACCAC---AGATATTGCAAAATTTAA-TAAATTAGAC 192560 ||||| ||||||||||| | |||| || || ||| | |||||| || ||| | Sbjct 21996 ATTATGCACAAAAACCATTAGTTATGACTAGAGCTATGG---AATTTATGTACTTTAAAG 21940 Query 192561 GATTATCCAAATGGTAT-TAATGCTATTGTTGCTATAGCTTGCTATACTGGCTATAACCA 192619 ||||| || |||| ||||||| | ||| |||| ||||||||||| || ||||| || Sbjct 21939 AATTATT--AAGTGTATGTAATGCTGTAGTTACTATTGCTTGCTATACAGGTTATAATCA 21882 Query 192620 AGAAGA--CAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTT 192668 ||| || ||||| ||| | ||| || |||||||||| ||||| |||||| Sbjct 21881 AGAGGATTCAGTA--ATTATGAATCAATCTTCTATTGACAGAGGTTTATTT 21833 >seq2134 Length=45942 Score = 102 bits (112), Expect = 1e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 193322 TACTGGTaaaaaaaTTGAAAATAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAA 193381 |||||| || | | ||||| ||||||| |||| ||||||||||| || | ||||| Sbjct 29717 TACTGGGAATAGACTTGAAGCACAAATTTTCTTAGGACCAACTTATTATCAGAGACTTAA 29776 Query 193382 ACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACTTTACATCG 193441 || |||||| | ||||| || ||| ||||| || ||| ||||| || ||| | Sbjct 29777 GCATATGGTTGATGATAAGATTCATTCTAGAGCTCGTGGTCAAGTTCAAACATTAACAAG 29836 Query 193442 ACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGA 193501 |||||||| | ||| | || |||||| || | |||||||| |||||||||| || Sbjct 29837 ACAACCAACTGAAGGTAGATCAAGAGGTGGTGGGCTTAGATTTGGTGAAATGGAAAGGGA 29896 Query 193502 CTGTAT 193507 ||||| Sbjct 29897 TTGTAT 29902 >seq1842 Length=60065 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 171608 TTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 171667 || ||||||| |||||| |||||| ||| || || | || |||||| || || || Sbjct 51815 TTGAAGAACTCTTATGGTTTATTAGAGGAAGCACAAATGCTAATGAATTAAGTGCTAAAG 51874 Query 171668 GTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTG 171727 |||| | | ||| ||| ||||| | | || || |||||| | ||| |||| || Sbjct 51875 GTGTCCATATCTGGGATGCAAATGGAAGTAGGGATTTCTTAGATAAACTCGGCTTTAATG 51934 Query 171728 AAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTC 171787 | ||| ||| || ||| |||| ||| |||| || || |||||||||||| || ||| Sbjct 51935 ATAGAGAAGTTGGAGATCTAGGGCCAGTTTACGGTTTCCAATGGAGACATTTTGGAGCTG 51994 Query 171788 AATATA 171793 |||||| Sbjct 51995 AATATA 52000 >seq2248 Length=123656 Score = 86.0 bits (94), Expect = 8e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 50407 ACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAA 50466 || |||| | |||||||| | |||| | | | |||||||||||||||||||| |||||| Sbjct 62891 ACTTTTAGATTGAATTTATCAGTGACAACACCTTATAATGCTGATTTTGATGGAGATGAA 62950 Query 50467 ATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAA-TTACAAGAATTAA 50521 |||||| | |||||||| ||| | | | ||| |||||| |||| |||| ||| Sbjct 62951 ATGAATATGCATGTTCCACAAAGCTTAGAAACTAAAGCTGAACTTAC-AGAAATAA 63005 >seq1096 Length=5945 Score = 86.0 bits (94), Expect = 8e-12 Identities = 174/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 50277 TGTAACACTTGAAGTTGGAGACTTGGTTAAAAGACAATTGATAGATGGTGATGATGTACT 50336 || ||| ||| || ||| || | ||| ||||||| || | |||| ||| ||||| | Sbjct 4641 TGAAACCCTTAAAACTGGTGATGTTGTTGAAAGACATATGGCAAATGGCGATTATGTATT 4582 Query 50337 ATTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTT-TAAAGTTAAAATTC 50395 ||| ||| | |||||| | | |||| | ||| || || | | | |||||||| || Sbjct 4581 ATTTAATCGTCAACCATCTTTACATAGAATTTCAAT-CATGGCTCATGAAGTTAAAGTTA 4523 Query 50396 --AACCAGTAAAA---ACATTTAAAATGAATTTAGCTATGACTAAAGCATATAATGCTGA 50450 ||| | ||| || ||| || ||||| | || | ||| | ||||||||||| Sbjct 4522 TGAACTACAAAACTCTACGTTTTAA-TGAATGTGTCTGT-ACTC---CTTATAATGCTGA 4468 Query 50451 TTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATT 50510 ||||||||| |||||||||||| |||| | || ||| | | | ||| | ||||| | Sbjct 4467 TTTTGATGGAGATGAAATGAATATACACTTACCACAAACTCAAGAAGCAAGAACTGAAAT 4408 Query 50511 ACAAGAATTAA 50521 | ||||||||| Sbjct 4407 AAAAGAATTAA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628510552750080