Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1993 89.7 9e-13 seq1 86.0 1e-11 >seq1993 Length=52953 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/134 (74%), Gaps = 11/134 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| |||| || || ||||||||||||| || ||||||| |||||||| Sbjct 24512 AGAGTTGATTCTTTTTGAATATTATAATCAGCAAGTGTTCTACCATCTTCTAATTGTTTG 24453 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||| || |||||||||||| ||||| | || |||| |||||||| || || ||| Sbjct 24452 CCAGCAAATATAAGTCTTTGTTGATCTGGAGGGATACCTTCTTTATCTTGGATTTTAGCT 24393 Query 81753 TTTATATTTTCAAT 81766 || | |||||||| Sbjct 24392 TTGACGTTTTCAAT 24379 >seq1 Length=265894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/127 (74%), Gaps = 11/127 (9%) Strand=Plus/Minus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 |||||||||| || ||||| |||| || ||||| | ||||| || ||| Sbjct 160813 ATTCCTTCTGAATGTTATAGTCAGCTAAGGTTCTGCCATCTTCCAATTGTTTCCCGGCAA 160754 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 | || ||||| |||||| | || | ||| ||||||||||||||||||| ||||| | || Sbjct 160753 AAATAAGTCTCTGTTGATCAGGGGGGATTCCTTCCTTATCTTGAATCTTAGCTTTAACAT 160694 Query 81760 TTTCAAT 81766 ||||||| Sbjct 160693 TTTCAAT 160687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903381522942080