Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1993 104 2e-17 seq2459 98.7 9e-16 seq2223 98.7 9e-16 seq1753 91.5 1e-13 seq156 89.7 5e-13 seq1008 84.2 2e-11 >seq1993 Length=52953 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | ||||||||||||||||||| || || || || | |||||| Sbjct 24750 AACCAAATGAAGTGTTGACTCTTTTTGAATGTTATAATCAGCCAAAGTCCTACCATCTTC 24691 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||| | | | || || | ||||||||| ||||| || ||||||||||| Sbjct 24690 TAACTGTTTACCAGCAAAAATAAGTCTCTGTTGATCAGGAGGGATTCCTTCTTTATCCTG 24631 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | | |||| | | || || || | || | ||||| Sbjct 24630 AATTTTCGCTTTAACATTTTCAATACTATCAGAAGATTCAACATCCAAAGTAATAGTTTT 24571 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | ||||||||||| Sbjct 24570 TCCAGTCAATGTCTTGACAAAAATCTGCAT 24541 >seq2459 Length=32074 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 || |||||||| | | || |||||||||||||||||||| ||| | ||| | ||| Sbjct 25529 AAGACCAAATGGAGAGTCGATTCTTTTTGAATGTTGTAGTCAGCT-AAGGTTCTTCCATC 25587 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | | ||||||| ||||| ||||| ||||| || ||||||||||| Sbjct 25588 TTCAAGCTGCTTTCCTGCAAAGATTAGGCGCTGCTGATCAGGAGGAATTCCTTCTTTATC 25647 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | || | | ||| | | ||| || || | || | ||| Sbjct 25648 TTGGATTTTTGCTTTTACGTTCTCAATTGAATCAGAAGACTCTACATCTAAAGTTATCGT 25707 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || | ||||| ||||| Sbjct 25708 CTTTCCTGTGAGTGTCTTAACAAAAATTTGCAT 25740 >seq2223 Length=42303 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | |||||||||||||||| |||||||| || ||| | |||||| Sbjct 22329 ACCAAGTGCAAAGTTGACTCTTTTTGAATATTGTAGTCAGCCAAGGTTCTTCCATCTTCT 22388 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| || | |||| || | |||||||||||||| || ||||||||||| Sbjct 22389 AGTTGTTTGCCAGCGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGG 22448 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | ||| | |||| | | || || || | || | ||||| Sbjct 22449 ATTTTGGCTTTAACGTTTTCAATGCTATCTGATGATTCAACGTCAAGTGTTATGGTTTTT 22508 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | ||| |||||||| Sbjct 22509 CCAGTGAGGGTTTTGACGAAGATCTGCAT 22537 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTT 131972 |||||| || | |||||||||| ||||||||||| || ||| | ||| | | ||||| Sbjct 21416 AACCAAGTGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGCT-AAGGTTCTCCCATCTT 21474 Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGG 132032 | || ||||| |||| | | || || | |||||||| || || || |||||||| || Sbjct 21475 CAAGTTGTTTTCCGGCAAATATGAGTCTTTGTTGATCAGGGGGAATTCCTTCTTTGTCTT 21534 Query 132033 TAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 || || || | | ||| | |||| | | |||||| || | || | |||| Sbjct 21535 GTATCTTAGCCTTTACATTTTCAATGCTATCAGATGACTCCACATCAAGAGTAATAGTTT 21594 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | ||||||| ||| || | |||||||||||| || Sbjct 21595 TTCCAGTCAAAGTCTTAACAAAAATCTGCATGCCT 21629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||||||||| || ||| | |||||| || ||||| || | Sbjct 22114 TTGACTCTTTTTGAATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCTAGTTGTTTGCCAG 22173 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| || | |||||||||||||| || ||||||||||| ||||| ||| | Sbjct 22174 CGAAGATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATTTTGGCTTTAA 22233 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | | || | | || || || | || | ||||| || || || |||| Sbjct 22234 CGTTTTCAATGCTGTCTGAGGATTCAACGTCAAGTGTTATGGTTTTTCCTGTGAGGGTTT 22293 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 22294 TGACGAAGATCTGCAT 22309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | ||||||||||||| ||||||||||| || ||| | |||||| Sbjct 22557 ACCAAGTGCAAAGTTGACTCTTTTTGGATGTTGTAGTCAGCCAAGGTTCTTCCATCTTCA 22616 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| || | | |||||| | ||||| |||||||| || |||||||| || Sbjct 22617 AGTTGTTTGCCTGCAAAGATTAACCTTTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGG 22676 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||| | | || | |||| | | ||| || || | || | || || Sbjct 22677 ATTTTAGCTTTGACATTCTCGATGCTATCTGAAGACTCGACATCTAAGGTGATTGTCTTG 22736 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| | ||| ||||||||| Sbjct 22737 CCTGTGAGTGTTTTAACGAAGATCTGCATG 22766 >seq1753 Length=65450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| |||| ||||||||||||| ||||| || || || || | |||||| Sbjct 9882 AACCAAGTGTAAAGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTTCCATCTTC 9823 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | | || || | |||||||||||||| || ||||||||||| Sbjct 9822 AAGCTGTTTTCCAGCAAATATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 9763 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | ||| | | || | | || || || | || | || || Sbjct 9762 GATTTTAGCTTTAACGTTTTCAATGCTGTCTGAGGATTCTACATCAAGTGTAATAGTCTT 9703 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||| || | ||||||||||| Sbjct 9702 ACCAGTTAGAGTCTTGACAAAAATCTGCAT 9673 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTT 131972 ||| ||||| | | |||||||| ||||| || || || ||| | ||| | ||||| Sbjct 10338 AACTAAATGAAGAGTCGACTCTTTCTGAATATTATAATCAGCTAA-GGTTCTTCCATCTT 10280 Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGG 132032 | || || || || | | | || || | || ||||| ||||| || ||||||||||| Sbjct 10279 CAAGTTGCTTTCCTGCAAATATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 10220 Query 132033 TAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 ||||| ||||| | ||| | | |||||| | |||||| || | || | |||| Sbjct 10219 GTATTTTAGCTTTCACATTTTCAATACTATCGGATGACTCCACATCAAGAGTAATAGTTT 10160 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||||| ||| || | ||||||||||| Sbjct 10159 TTCCAGTCAAAGTCTTAACAAAAATCTGCAT 10129 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | ||||||| |||||||||||||| || || || | ||| || Sbjct 10110 AACTAAATGCAAAGTTGACTCCTTTTGAATGTTGTAATCAGCCAAAGTTCTTCCATCCTC 10051 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | |||| || | |||||||| || || || ||||||||||| Sbjct 10050 AAGTTGTTTTCCTGCAAAGATAAGTCTTTGTTGATCAGGGGGGATACCTTCTTTATCTTG 9991 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | ||| | | |||| | | ||| || || | || | ||||| Sbjct 9990 GATTTTAGCTTTGACATTTTCAATACTATCAGAAGACTCAACATCAAGTGTGATAGTTTT 9931 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| |||||| | || || ||||| Sbjct 9930 TCCAGTCAAAGTTTTAACAAAGATTTGCAT 9901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 || || |||| ||||||||||||||||||||||||| ||| | ||| | |||||| Sbjct 9425 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCAGCTAA-GGTCCTTCCATCTTC 9367 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | | || || | |||||||||||||| || |||||||| || Sbjct 9366 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 9307 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | || | | || | | ||| || || | || | ||||| Sbjct 9306 GATTTTAGCTTTGACGTTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 9247 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 9246 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 9217 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| ||||||||||||| ||||| || || || || | |||||| Sbjct 9654 AACCAAATGTAATGTTGACTCTTTTTGGATGTTATAATCAGCCAAAGTCCTACCATCTTC 9595 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | |||| || | ||||| ||||| || || ||||||||||| Sbjct 9594 CAATTGTTTTCCAGCGAAGATAAGCCTTTGTTGGTCTGGGGGAATACCTTCTTTATCTTG 9535 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | | | || | | ||| || || | || | ||||| Sbjct 9534 AATTTTGGCTTTGACATTTTCAATACTGTCTGAAGACTCGACGTCAAGTGTTATAGTTTT 9475 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | || |||||||| Sbjct 9474 TCCTGTAAGGGTTTTGACAAAGATCTGCAT 9445 >seq156 Length=23114 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATC 131970 || |||||||| | |||| |||||||||||||| ||||| ||| | ||| | ||| Sbjct 22154 AATACCAAATGAAGAGTTGATTCTTTTTGAATGTTATAGTCTGCT-AAGGTTCTTCCATC 22212 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| ||||| || || | | |||| ||||| || ||||| ||||| || |||||||| || Sbjct 22213 TTCTAGCTGCTTTCCTGCAAAGATAAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTC 22272 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||| | | || | | ||| | | || || || | || | ||| Sbjct 22273 TTGAATTTTAGCTTTTACATTCTCAATTGAATCAGAAGATTCTACATCTAAGGTAATCGT 22332 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || | ||||| ||||| Sbjct 22333 CTTTCCTGTGAGAGTCTTAACAAAAATTTGCAT 22365 >seq1008 Length=7107 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 || || |||| ||||||||||||||||||||||||| ||| | ||| | |||||| Sbjct 7082 ACTAAGTGTAATGTTGACTCTTTTTGAATGTTGTAGTCTGCTAA-GGTCCTTCCATCTTC 7024 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || || | | | || || | |||||||||||||| || |||||||| || Sbjct 7023 AAGTTGCTTGCCAGCAAAAATAAGCCTTTGTTGATCTGGAGGAATACCTTCTTTGTCTTG 6964 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||| ||| | | || | | || | | ||| || || | || | ||||| Sbjct 6963 GATTTTAGCTTTGACATTCTCTATGCTGTCTGAAGACTCTACATCTAAAGTGATTGTTTT 6904 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| | ||| |||||||| Sbjct 6903 GCCTGTGAGTGTTTTAACGAAGATCTGCAT 6874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476595543322080