Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1417 210 2e-49 seq2384 206 2e-48 seq317 183 2e-41 seq1842 134 1e-26 >seq1417 Length=75703 Score = 210 bits (232), Expect = 2e-49 Identities = 582/879 (66%), Gaps = 15/879 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCAC-AGGC 43758 || ||| |||| || || ||||| | || || ||| ||||||||||| ||| | || Sbjct 14516 TTCGTCATGTTCCCGATACAATACAACGATATCTGGACTATGTACAAAAA-GCATGAAGC 14458 Query 43759 GTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATT 43818 |||||||| ||||||| |||||||| || |||| || | ||||| |||| Sbjct 14457 AAGTTTTTGGACTTCAGAAGAGCTTGATTTGGCTCAAGATCTAAGAGATTGGGAAACATT 14398 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 | | |||| ||||||||| | ||||| || |||||||| || || || Sbjct 14397 GACTGATGATGAAAGGCATTTTATAAAATATGTTTTAGCTTTTTTTGCAGCTTCTGATGG 14338 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACG 43938 || ||| |||||| | | ||| | ||| ||||||||| | || ||||| || Sbjct 14337 AATTGTCTTAGAAAATCTTGCCAGTAGATTTTTCTGTGAAGTTCAAATCCCTGAAGCTCG 14278 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 | |||||||| ||||||||||| || ||||| || || || | || | | | Sbjct 14277 AGCATTTTATGGATTTCAAATTGCTATGGAAAACATACACAGTGAGACTTATTCTATGTT 14218 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA-AA 44057 || || ||||| || |||||| || || || | ||| ||||||| ||| | || Sbjct 14217 AATCGACACGTATATAAAAGATCCTCAAGAAAAAAACATATTACTTAATGCAATAAACAA 14158 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 | | | |||||||| | ||||| || ||||| | |||||||| || | || | Sbjct 14157 CTTTGAAT-CGATTAAAAAAAAAGCTGATTGGGCTTTGAAATGGATTGATAGCAGTGCAT 14099 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCG 44176 ||||| || ||||||| || | ||| | || ||||| ||||||||||| || | | Sbjct 14098 GTTTTGCCCAAAGACTTGTAGCATATGCTGCAGTTGAAGGTATTTTCTTTTCTGGGAGCT 14039 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 |||| | || || ||| | || ||||| | |||||||| | || ||||| ||| Sbjct 14038 TTTGTT-CGATTTTCTGGCTGAAAAAACGTTCACTTATGCCTGGTCTCACATTTTCTAAT 13980 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA- 44295 || | || ||| | |||||||| |||||| ||||||||||| |||||| ||| Sbjct 13979 GAACTTATCAGTAGAGATGAAGGTTTACATACAGATTTTGCTTGTTTGTTA----TATAC 13924 Query 44296 TCTAGGAGACGATAAGC--CTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 || | |||||| | || | ||| ||| |||||| || || || | Sbjct 13923 TCACATTGTTAATAAGCTACCACAAG-AAG-TTATTCAAGATATGATTCGTGAAGCTATT 13866 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAA 44413 | || ||| |||| ||||| || ||| ||||| || | || || ||||||||| | Sbjct 13865 ATAATTGAAGAAGAGTTTATTACTGAAGCTTTACCAGTTGAATTGATTGGAATGAATTCA 13806 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 | ||| |||||| |||||| ||||| ||| | |||||| | | | || || Sbjct 13805 AGGCTTATGTCTCAATATCTTGAATTTATTGCGGATAGATTACTTATTGCTTTAGGATGT 13746 Query 44474 GATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 || ||| |||| || ||| || ||||| | ||||| | ||||| || | || Sbjct 13745 GAGAAAATATATAAAGTGGCAAATCCTTTTGAGTGGATGGAGATGATTTCTATGCAGGGT 13686 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 || || || || |||||||| | || | || |||||| Sbjct 13685 AAGACGAATTTCTTTGAAAAGAGAGTGAGTGATTATCAG 13647 >seq2384 Length=116048 Score = 206 bits (228), Expect = 2e-48 Identities = 593/898 (66%), Gaps = 23/898 (3%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||| ||||| || |||||| |||||||||| |||||| ||| || ||| ||||| Sbjct 42462 AGAGAATCCTAACAGATTTGTCATGTTTCCAATACAATATAGTGATATTTGGACTATGTA 42403 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 || ||| | || |||||||| || ||||| | || ||| || |||||||| Sbjct 42402 TAAGAAACATGAAGCTAGTTTTTGGACTGCTGAAGAGTTGGACTTGGCTCAAGACTTACG 42343 Query 43804 ACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTT 43863 ||||| | | | | |||| ||| ||||| | || || || ||||| Sbjct 42342 TGATTGGGAAAAACTTACTGATAATGAAAGACACTTTATTAAGTATGTCTTAGCTTTTTT 42283 Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA 43923 |||||| || ||||| || || ||| | | || | ||| |||||||| Sbjct 42282 TGCTGCTTCTGATGGGATTGTATTGGAGAATCTTGCTACTAAGTTCTTTTGTGAAGTTCA 42223 Query 43924 ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 | | || || || ||| ||||||||| ||||| || ||||| |||||| ||||| || Sbjct 42222 AATTCCTGAGGCTCGAGCTTTTTATGGATTTCAGATAGCCATGGAAAATGTTCATAGTGA 42163 Query 43984 AATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTT 44043 || || | || || || || || |||| ||| || || || | || || Sbjct 42162 AACTTATTCGATGCTTATCGACACATATATCACTAATGTTCAAGAAAAAAGTATGTTATT 42103 Query 44044 TAATGCGATAGAAACAGTA-CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA 44102 ||||| || | ||| | || | |||||| | |||||||||||||| | ||||||| Sbjct 42102 CAATGCTATC-ACACACTTTCCATCAATTAAAAAGAAAGCAGACTGGGCTTTGAAATGGA 42044 Query 44103 TAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 ||||| | ||| |||| || |||| || || | || | | | ||||| |||| Sbjct 42043 TAAATAGCAGCGATAGCTTTGCCCAAAGACTCGTTGCATACGCTGCTATAGAAGGGATTT 41984 Query 44163 TCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGG 44221 ||||||| || | |||||| | ||||| ||| | || ||||| | | ||||| ||| Sbjct 41983 TCTTTTCTGGGAGTTTTTGCG-CAATATTCTGGATGAAAAAACGTTCTCTTATGCCAGGG 41925 Query 44222 TTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | || ||||| ||||| | |||||||| |||||||| | ||| ||||||||||| Sbjct 41924 CTCACATTTTCCAATGAACTGATAAGTCGAGATGAAGGTCTTCATACAGATTTTGCTTGT 41865 Query 44282 TT--GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA-CAATTACA-GATAT 44337 || |||| |||| || |||||| |||| |||| ||| | | || || Sbjct 41864 TTACTATACTCACATAT-----AGTTAATAAGCTTTCA--CAAGATCAAATCTATGAAAT 41812 Query 44338 TGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTT 44397 | || || || | | || || |||||||||| ||| ||| | || ||| | | Sbjct 41811 TATTCGTGAAGCTATTGAAATTGAGAAAGAATTTATAACAGAAGCTCTTCCAGTAGAACT 41752 Query 44398 AATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTAC 44456 || || ||||| | || || ||| |||||| |||| | |||| ||| | || Sbjct 41751 TATTGGTATGAACTCAAGGCTT-ATGTCTCAATATCTTGAGTTTGTTGCTGATAG---AC 41696 Query 44457 TTT---TGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGG 44513 ||| | | ||||||| |||||| || ||| ||| || ||||| | |||| Sbjct 41695 TTTTAGTTGCTTTGGGTTGTGATAAATTATACCGCGTATTAAATCCTTTTGAATGGATGG 41636 Query 44514 AAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | | || || || |||| || |||||||||||||||||||| || | || ||||| Sbjct 41635 AGATGATATCAATGCAAGGTAAGACAAACTTTTTTGAAAAACGTGTGAGTGAGTATCA 41578 >seq317 Length=19370 Score = 183 bits (202), Expect = 2e-41 Identities = 395/591 (67%), Gaps = 6/591 (1%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 || || |||||||| |||| || | |||| | | | || ||||| | | ||| Sbjct 10098 ATTTTCCGTAGAGCTTTTGCTTCAAGGCTTTTCCCACCTCAAGTTGTTAAAAAGCTTGGA 10039 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 | ||||||| |||||| | | |||||||| || || ||| |||||||||||||| Sbjct 10038 ATTCAACATGTACGTGGAATGCTTCTTTATGGTCCTCCAGGTACAGGAAAAACATTAATA 9979 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || ||| || | |||| |||| | | || ||||| || ||||| |||||| Sbjct 9978 GCAAGACAAATAGCAAAATGTCTTAAAGCTCGTGAACCAAAAATCGTCAATGGCCCTGAA 9919 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 | || |||| || ||||| ||| | ||| |||| | || ||||||| || ||| Sbjct 9918 GTATTTGATAAGTACGTAGGACAAACAGAACAAAACATTAGAGATTTGTTTAAAGAAGCT 9859 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 ||| |||| ||| || | || ||||| || || ||||| | |||||||| Sbjct 9858 GAACAAGAGCAAGAAAAAATGGGTGATAAAAGCAAATTACATATTATTGTCTTAGATGAA 9799 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGG------TTCTGGTGTAAATGGAGTACATGACACT 19626 | || || || |||| | ||||| ||| || | | | || ||||| || Sbjct 9798 ATTGATGCTATTTGTAGACCTAGAGGAACAGTTTCAGGAGGTACTAATGTTCATGATACA 9739 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 | |||||||||| | | |||||| | || || || || | || ||||||||| || Sbjct 9738 GCTGTCAATCAATTATTATCAAAAATCGATGGGGTAAATTCTTTAAACAATATTTTACTT 9679 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 ||||| ||||| |||||| || | || || || | ||| |||| || |||| Sbjct 9678 ATTGGTATGACAAATAGAAAAGATATGATTGATGAAGCAATTTTAAGACCAGGAAGGTTA 9619 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 ||||| | | ||||| |||||| |||||| ||||||||| |||| ||||| || Sbjct 9618 GAAATGCATGTGGAAATATCCTTACCTGATGAAGCTGGACGTGTTCAAATATTAAATATT 9559 Query 19807 CATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTA 19857 ||||| || ||| || ||||||| |||||||| ||||| ||| || Sbjct 9558 CATACTAAGACTATGAGAGAAAATAATATTTTAAATCGTGATGTTGATATA 9508 >seq1842 Length=60065 Score = 134 bits (148), Expect = 1e-26 Identities = 378/573 (66%), Gaps = 8/573 (1%) Strand=Plus/Plus Query 40704 ACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGT 40763 || |||||| | |||||||||||| | | |||||||| ||||||||||| | ||| Sbjct 51784 ACAACAAAATTAGTGTTTTGGAAAGCAGTGGTTGAAGAACTCTTATGGTTTATTAGAGGA 51843 Query 40764 TGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCT 40823 | || |||||||| ||||| | | ||| || || || ||| |||| | | | Sbjct 51844 AGCACAAATGCTAATGAATTAAGTGCTAAAGGTGTCCATATCTGGGATGCAAATGGAAGT 51903 Query 40824 AAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTT 40883 | | || || | || || | ||||| || | || ||||| || || ||| Sbjct 51904 AGGGATTTCTTAGATAAACTCGGCTTTAATGATAGAGAAGTTGGAGATCTAGGGCCAGTT 51963 Query 40884 TATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACC 40943 || || || || | | ||||||||||||| ||||| | |||| | |||| ||||| Sbjct 51964 TACGGTTTCCAATGGAGACATTTTGGAGCTGAATATACTAATATGAATGCTGACTATACA 52023 Query 40944 AATAAAGGAATGGATCA-ATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAG 41002 || ||||| | ||||| || ||| ||||| | || ||| | ||||| ||| Sbjct 52024 AACCAAGGAGTTGATCAGCTTGCAG-AAGTTATTAAACTTATAAAAACAGATCCTGATTC 52082 Query 41003 CCGACGTATAATATTGTGCGCGTGGAA-CCCAACGGACGTACATTTGATGGCATTGCCAC 41061 || |||||| || || | || ||||| || || | ||||| ||||| ||||| | Sbjct 52083 ACGTCGTATAGTAATGAGTGCTTGGAATCCTAAATCTCAACCATTT-ATGGCTTTGCCTC 52141 Query 41062 CTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 |||| ||| | | || ||||||| || ||||| |||| || | |||||| Sbjct 52142 CTTGCCATGTTCTTTGCCAGTTTTTTGTAGAAAATGGAAAACTCAACTGCCTTATGTATC 52201 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 | |||||||| || ||||| |||| || || ||||| | || || || | || | | Sbjct 52202 AGAGATCAGGCGATATGGGTTTAGGCGTTCCTTTTAATGTTGCAAGCTACTCACTATTAA 52261 Query 41182 CGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA--GG 41239 | | | ||||| || ||| | ||| || ||||| || ||| || |||| || Sbjct 52262 CATGCTTAATTGCTCAAGTTTGTGACTTACAAAGAGGTGACTTCGTT--CATGTTATTGG 52319 Query 41240 AGATGGACATATTTACATTAATCACATAGAGCC 41272 |||| ||| |||| | || || || ||||| Sbjct 52320 AGATACTCATGTTTATACAAACCATATTGAGCC 52352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397443269981140