Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq521 138 1e-27 seq149 136 5e-27 seq2491 93.3 5e-14 seq1417 84.2 3e-11 >seq521 Length=94946 Score = 138 bits (152), Expect = 1e-27 Identities = 305/454 (67%), Gaps = 5/454 (1%) Strand=Plus/Minus Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||| ||||| ||||| || ||||| || || || | || | |||||| | | Sbjct 25461 CTCGTATTTTGTATAGAGAGCATCAAATTCTTCGCCGTATACATCACAAAGACCTTGA-C 25403 Query 111520 CTTGTCT-GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 ||| | ||||| | ||| ||| | || ||| ||||| | ||||| ||||| | Sbjct 25402 ATTGATTAGGACACATAAGGCTCCAGTCTCCGTTTTCTTCAACTCTTTTCATAAAAAGAT 25343 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 | || ||||| || | |||| |||||||| ||| ||||| | || ||||||| Sbjct 25342 CAGGGATCCAGAGAGCGTAAAAAAGATCTCTGGCTCGATGTTCTTCTTTTCCATGGTTGA 25283 Query 111639 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | | | |||||| | || || || ||||| ||||||||||| || || | | Sbjct 25282 GTTTCAGTTTTAAGAACTCAAAAATGTCAGCATGCCAAGGCTCAAGATAAACAGCAAATG 25223 Query 111699 ATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 ||| |||| | |||| |||| | |||||| || ||||| | || ||||| | || Sbjct 25222 CTCCTTTTCTCTTCCCCCCACCTTGGTCTACATAACGAGCTGTATCATTGAATACTCTAA 25163 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| || | || ||||| ||| | ||||| || || || ||| ||| | |||| Sbjct 25162 GCATAGGCACAAGACCATTTGAGTTTCCATTGGTTCCACGGATATAAGAAGATGTTGCTC 25103 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | | || | | || |||||||||||||| || |||| | || || | | Sbjct 25102 TTATGTTGTGAACACTTAAGCCTATACCCCCAGCCCATTTACTGATTAGAGCGCATTGCT 25043 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 | || ||| |||| ||||||| |||||||| || Sbjct 25042 TTAGTGTTTCATAAATACCGTCTATTGAGTCATC 25009 >seq149 Length=23196 Score = 136 bits (150), Expect = 5e-27 Identities = 304/453 (67%), Gaps = 5/453 (1%) Strand=Plus/Plus Query 111461 TCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCC 111520 || || ||| | ||||| |||||||| || ||||| | | || |||||| | || Sbjct 93 TCATATTTTATATAGAGAGCTTCAAATTCTTCACCGAATACATCACTTAGACCTTG-GCA 151 Query 111521 TTGTCT-GGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTC 111579 ||| | ||||| | |||| ||| | ||| ||| ||||| | ||||| ||||| || Sbjct 152 TTGATTAGGACACATAAGACTCCAGTCTCCATTTTCTTCAACTCTTTTCATAAAAAGATC 211 Query 111580 TGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG 111639 ||||||||||||| |||| || |||||| | | ||||| | || |||||||| Sbjct 212 AGGAATCCACAGGGCGTAAAAAAGGTCTCTAGCTCTATGTTCTTCTTTCCCATGGTTGAG 271 Query 111640 TCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGA 111699 || | ||||| || | ||||| || ||||| ||||||||||| || || | | Sbjct 272 CTTTAGTTTTAGGAATTCAAAAATATCAGCATGCCAAGGCTCAAGATAAACAGCAAATGC 331 Query 111700 TCCCTTTC---GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 ||| |||| | ||| |||||| |||||| || ||||| | ||||| || | || Sbjct 332 TCCTTTTCTTTTCCCTCCACCTTGATCTACATAACGAGCTGTATCATTAAAAACTCTGAG 391 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| || | | |||| ||| | ||||| || || || ||| || | ||||| Sbjct 392 CATAGGTACCAGGCCATTTGAGTTTCCATTGGTACCACGGATATAGGAAGATGTTGCTCT 451 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | || | | | || ||||| |||||||| || |||| ||||||| | | Sbjct 452 TATGTTGTGAACGCTTAAGCCTATACCTCCAGCCCATTTGCTGATTAAAGCACACTGCTT 511 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTC 111909 || ||| | || ||||| | || ||||| || Sbjct 512 CAGTGTTTCGTAAATACCATCTATAGAGTCATC 544 >seq2491 Length=30888 Score = 93.3 bits (102), Expect = 5e-14 Identities = 248/370 (67%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 111046 AAATACA-TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACT 111104 ||| ||| || || | |||||| | ||| | |||||||||||| |||| | ||| || | Sbjct 4539 AAAGACAGTCAGCAAAACCTTGGATACCAATACCAATAGGTCTATGTCTTAAATTTGAAT 4480 Query 111105 TTCGCGCAGTC-TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 ||| || || || || ||| |||||||| |||| | || ||||| | || Sbjct 4479 TTC-TACATTCAGGTACTGGGTAATGGTTTCTGTCTATGATTTTATTAAGATTATAAGTG 4421 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 || ||||| | ||| | ||||||| ||||||| || || || |||||| Sbjct 4420 ACTTGTTTTGTCACTTCGAATAATTTTTCAAAATCAAAGGT--TTTTCGGTT-TTTGACA 4364 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 ||| | | || |||||||| | |||||||| || | ||||| || |||||| Sbjct 4363 TACATGTTTAAAGCAATTGATGCTAGGTTGCAAACTGCGATTTCATCTTTGCTTGTGTAT 4304 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 || | ||||| ||||| | || || || |||||||| | || |||||||| Sbjct 4303 TCACAGATTTCAGTACAGAGATTTGAGGATTTTATCGTCCCTAGGTTTTTTTGGTTTGAA 4244 Query 111344 TTCTTGTTGCAC-GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTT 111402 | |||| ||| || ||||| ||||| || || || || ||||| || ||||||| Sbjct 4243 AACCTGTT-CACATGGTCTTTGTATAGCATATAAGGAGTTCCAGTCTCAGTTTGTGATTC 4185 Query 111403 GAGAATAGCC 111412 | ||| ||| Sbjct 4184 AACAATCGCC 4175 >seq1417 Length=75703 Score = 84.2 bits (92), Expect = 3e-11 Identities = 330/507 (65%), Gaps = 19/507 (4%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||| ||||||| ||||||||||| || || ||||| ||||| || || || Sbjct 13956 ACCTTCATCTCTACTGATAAGTTCATTAGAAAATGTGAGACCAGGCATAAGTGAACGTTT 14015 Query 122736 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 122795 |||| ||| |||| | || || ||| || ||||| ||||| || || ||| | Sbjct 14016 TTTCAGCCAGAAAATCGAACAAAAGCTCCCAGAAAAGAAAATACCTTCAACTGCAGCATA 14075 Query 122796 CGCAAAAAGGCGTTCGGCGAAGGA-GCGAGACTTTGC-ATCAAACCATTTCATTGCCCAT 122853 || | ||| | || ||| || | || ||| || ||||| |||||||| ||||| Sbjct 14076 TGCTACAAGTCTTTGGGCAAAACATGC---ACT--GCTATCAATCCATTTCAAAGCCCAA 14130 Query 122854 TTCGCCTTCTTCTCAATACATGGTACAGTT-TGGATGGCTTCAAATAACTGCTTCTTTTC 122912 | || || || | ||| || | |||| | || || | || ||| || ||||| Sbjct 14131 TCAGCTTTTTTTTTAATCGATTCAA-AGTTGTTTATTGCATTAAGTAATATGTTTTTTTC 14189 Query 122913 AGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTC 122972 ||| || || || |||| || || | ||||| || || | || | |||| Sbjct 14190 TTGAGGATCTTTTATATACGTGTCGATTAACATAGAATAAGTCTCACTGTGTATGTTTTC 14249 Query 122973 ATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCA 123030 || ||| |||| || | || |||| || ||||| || ||||| ||| | | | Sbjct 14250 CATA--GCAATTTGAAATCCATAAAATGCTCGAGCTTCAGGGATTTGAACTTCA-CAGAA 14306 Query 123031 AAATTGTTATTG---ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 |||| || || | ||| || || ||||||||||| || | ||||| || || | Sbjct 14307 AAATC--TACTGGCAAGATTTTCTAAGACAATTCCATCAGAAGCTGCAAAAAAAGCTAAA 14364 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTG 123147 | || ||||| || | | |||||| ||| ||| || | ||| || ||||||| Sbjct 14365 ACATATTTTATAAAATGCCTTTCATCATCAGTCAATGTTTCCCAATCTCTTAGATCTTGA 14424 Query 123148 GACAAATCAACTTCTTCCGCAGTCCAA 123174 | |||||||| ||||| | ||||||| Sbjct 14425 GCCAAATCAAGCTCTTCTGAAGTCCAA 14451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628011369148800