Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq521 147 3e-30 seq1981 129 7e-25 seq2491 114 2e-20 seq149 111 2e-19 >seq521 Length=94946 Score = 147 bits (162), Expect = 3e-30 Identities = 444/678 (65%), Gaps = 17/678 (3%) Strand=Plus/Plus Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || |||||||| ||||||| |||| ||| || | | | || || | |||| || ||| Sbjct 25009 GATGACTCAATAGACGGTATTTATGAAACACTAAAGCAATGCGCTCTAATCAGTAAATGG 25068 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||||||||| || | | || | | ||||| | ||| ||| || || Sbjct 25069 GCTGGGGGTATAGGCTTAAGTGTTCACAACATAAGAGCAACATCTTCTTATATCCGTGGA 25128 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| | ||| ||||| || | || |||||| | ||||| || | ||||| || Sbjct 25129 ACCAATGGAAACTCAAATGGTCTTGTGCCTATGCTTAGAGTATTCAATGATACAGCTCGT 25188 Query 104576 TATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 |||||| | |||| |||| | |||| ||| | | || || ||||||||||| ||| Sbjct 25189 TATGTAGACCAAGGTGGGGGGAAGAGAAAAGGAGCATTTGCTGTTTATCTTGAGCCTTGG 25248 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 || || || || | |||||| | | || |||||||| || | || || || Sbjct 25249 CATGCTGACATTTTTGAGTTCTTAAAACTGAAACTCAACCATGGAAAAGAAGAACATCGA 25308 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 | | ||||| || | |||||||||||| || ||||| || ||||| |||||||| || Sbjct 25309 GCCAGAGATCTTTTTTACGCTCTCTGGATCCCTGATCTTTTTATGAAAAGAGTTGAAGAA 25368 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | || | ||| || | ||||| | ||| | | ||||| | |||| || Sbjct 25369 AACGGAGACTGGAGCCTTATGTGTCCTAATCAATG-TCAAGGTCTTTGTGATGTATACGG 25427 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGT 104871 || || ||||| || || || ||||| |||||| || ||||| ||| | || || Sbjct 25428 CGAAGAATTTGATGCTCTCTATACAAAATACGAGCAACAAGGTATGGCAAGGAAAACAGT 25487 Query 104872 GCCAGCTGCCGATG---TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | || ||| | | | ||| ||| || | | |||| || ||||| ||||| Sbjct 25488 -CAAG--GCCCAAGCATTATGGTCAGCAATAATTGATAGCCAAATAGAAACTGGCACACC 25544 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 || |||||||| ||||| | ||| | | ||||||||| ||| | || || Sbjct 25545 TTATATGCTTTATAAAGATACTGCTAATAAGTATTCTAATCAAAAAAATCTAGGGACAAT 25604 Query 104989 CAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 || ||| || | || || |||||| | |||| ||| ||||||||| | || Sbjct 25605 AAAATCAAGT---AACTTATGCACTGAAATCCTTGAATATACTAGCAAAGATGAAATTGC 25661 Query 105046 TGTGTGTAACCTCGCATC 105063 ||| || ||| | || || Sbjct 25662 TGTATGCAACTTAGCCTC 25679 >seq1981 Length=53738 Score = 129 bits (142), Expect = 7e-25 Identities = 727/1138 (64%), Gaps = 46/1138 (4%) Strand=Plus/Plus Query 104513 GGGACAAATGGTCAATCAGATGGTATTA-TTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 ||||||||||| ||| |||| |||| |||| ||| | | || ||||| | ||||| Sbjct 25528 GGGACAAATGGAACTTCAAATGG-ATTAGTTCCTATGTTAAGAGTTTTTAATGATACAGC 25586 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCC 104628 | |||||| |||||| |||| | |||| ||| || | ||||| ||| | ||||| Sbjct 25587 TAGATATGTAGATCAAGGTGGGGGGAAAAGAAAAGGAGCTTTTGCAGTATATTTAGAGCC 25646 Query 104629 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA----GGTGACGAGG 104684 |||||| |||||||| | || || || ||| | || || ||| | |||| Sbjct 25647 ATGGCATGCGGATATATTTGAATTTCTAA---TGCTTAA-AAGGAATATTGGTAAAGAGG 25702 Query 104685 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | || | ||||| || | || || ||| |||||||| | || ||||| | | Sbjct 25703 AACAAAGGGCTAGAGATCTGTTTTTCGGCCTTTGGGTTCCAGATTTGTTTATGAAACGTG 25762 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATG 104804 |||| | | ||| | ||| || | | ||||| | | ||||| || || |||| Sbjct 25763 TTGAAAAAAATGGTGAGTGGACTTTGATGTGTCCTAATGATTGCCCTGGACTTTCTGATG 25822 Query 104805 CCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG 104864 | ||| || || ||||| | ||||| ||| || || |||||| | | | Sbjct 25823 TCTGGGGAGAAGAATTTGAGTCACTTTATGAAAAATATGAACGTGAAGGTAGAGGAAGAA 25882 Query 104865 CGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| || ||| | || | ||| || ||| | | ||||| || |||||||| Sbjct 25883 GGACTGTTAAAGCA-CAGACACTATGGGCGGCGATTATTGAATCTCAGACTGAGACTGGA 25941 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT---AATCAAAAGAATTTG 104980 || || || ||||| |||||||| | ||| | || | | |||||||| || || Sbjct 25942 ACTCCTTATATGCTATACAAAGAT-CATGTTAACAG--GTTTTCAAATCAAAAAAACTTA 25998 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || || || || ||||||||||| ||||||| |||| ||| |||||||| Sbjct 25999 GGGACAATTAAATCATCTAATCTCTGTACTGAAATCTGTGAATACACAAGTAAAGATGAA 26058 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA--CAA 105098 | || || |||||| | |||||||| ||| | || |||||| ||| || | Sbjct 26059 ATTGCAGTTTGTAACTTAGCATCAATTGCTTTAAACATGTATGT-----CAGGGATCGTA 26113 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 | || ||||| | ||||||| | ||||| || || || || | || || || | Sbjct 26114 AAACTTTTGACTTTGAAAAATTATTTGAAGTAACAAAGCAAGTTACATACAATCTTAATA 26173 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | | || ||||||||| |||||| || || || | | || || || | ||||| Sbjct 26174 AAATCATAGATAGAAATCATTACCCTGTACCTGAATG-TAGAAATTCAAACTTAAGACAT 26232 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGTATTCATTCTTTGT-CGCCACG 105275 | || |||||| | ||| |||| || | || || ||| || || || | | Sbjct 26233 AGGCCGATTGGTATTGGTATTCAAGGATTTGCTGACTGTCTT--TTATTACTAAAATATC 26290 Query 105276 CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACG 105335 ||||||| | | |||| ||| | || || || || || || ||| | Sbjct 26291 CATTTGAAAGCTATCAAGCCTTAGAACTAAACCGGCAGATTTTCGAATGTATTTATTTTG 26350 Query 105336 CCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTG 105392 | || || | | |||| || | || | ||||||||||||| ||| | || Sbjct 26351 CTGC-ATTAA--CAGCTTCAAATGAACTAGCCCAACGTGATGGTCCATATTCAACATATG 26407 Query 105393 AGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AG 105451 | ||||| || | ||| |||||| | |||||||||||| |||| | |||| Sbjct 26408 AAGGTTCGCCTGTTTCTCAAGGGCAATTCCAATTTGATATG-AGGAATATTCAACCATCA 26466 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCA--TCAAGGAGAAGGGTCTTCGTAACA 105509 ||| | || |||||| ||| | |||| | | || | | || || | || Sbjct 26467 AATCAATGGGATTGGGAAAATCTTA--GAACTAAAGTTAAACAATATGGAGTTAGGAATT 26524 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 | || || || |||||||||||||| || || ||||||| || || |||||||| Sbjct 26525 CATTACTTATAGCCCCAATGCCAACAGCTTCAACATCACAAATATTAGGAAATAATGAGA 26584 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627 | |||||||| || || | || || ||| |||||| || || || |||||||| Sbjct 26585 GTTTTGAACCTTATACATCAAATATTTATACTAGAAGAGTTCTTGCTGGGGAGTTTGT 26642 >seq2491 Length=30888 Score = 114 bits (126), Expect = 2e-20 Identities = 483/743 (65%), Gaps = 45/743 (6%) Strand=Plus/Plus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 || ||||| |||||||| || || || ||||| ||||||||| | ||| | || | | Sbjct 4188 TCACAAACTGAGACTGGAACTCCTTATATGCTATACAAAGAC-CATGTGAACAG--GTTT 4244 Query 104966 ---AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 || ||||| || | || ||| || || ||||||||||| ||||||| ||| Sbjct 4245 TCAAACCAAAAAAACCTAGGGACGATAAAATCCTCAAATCTCTGTACTGAAATCTGTGAA 4304 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 | ||| ||||||||| | || || || ||||| |||||||| ||| | || |||| Sbjct 4305 TACACAAGCAAAGATGAAATCGCAGTTTGCAACCTAGCATCAATTGCTTTAAACATGTAT 4364 Query 105083 GTGGATCCAGAGAC--AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 || || | || ||| || ||||||| ||||||| | |||||| || ||| | Sbjct 4365 GT-----CAAAAACCGAAAAACCTTTGATTTTGAAAAATTATTCGAAGTGACAAAACAAG 4419 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGT 105199 |||| | || || || | | | || || ||||| |||||| || || || | | Sbjct 4420 TCACTTATAATCTTAATAAAATCATAGACAGAAACCATTACCCAGTACCTGAATG-TAGA 4478 Query 105200 AAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA-TGT-AT 105257 || || ||| | ||||| | || |||||| | ||| | || ||| | || || ||| | Sbjct 4479 AATTCAAATTTAAGACATAGACCTATTGGTATTGGTATCCAAGGTTTTGCTGACTGTCTT 4538 Query 105258 TCATTCTT----TGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGC 105313 | ||| || | || |||| || | |||| ||| | ||| || | Sbjct 4539 TTATTATTAAAATATC------CATTCGAAAGTCATCAAGCCTTAGAACTGAAT-CG-TC 4590 Query 105314 ATATTTGAGACCATGTATC-AC---GCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGA 105366 | |||| || ||||||| || |||||| || | | |||| || || || | Sbjct 4591 AGATTTTCGA--ATGTATCTACTTTGCCGCT-TTAA--CAGCTTCAAATGAATTAGCTCA 4645 Query 105367 GGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATT 105426 |||||||||||| ||| | ||| ||||| || ||| ||||| ||||||| Sbjct 4646 ACAAGATGGTCCATATTCAACATATGAAGGTTCACCGATTTCTCAAGGACAATTTCAATT 4705 Query 105427 TGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGC 105484 ||||||| | | | || | | || ||| | || ||| ||| || | || Sbjct 4706 TGATATGAGAAATATTCAG--CCATCTAATCAATGGGATTGGCAAGGACTTAGAGATAAG 4763 Query 105485 ATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACC 105544 || || | | || || | || | || || || |||||||||||||| || || Sbjct 4764 ATTAAAAAATATGGGGTTAGGAATTCATTACTTATAGCCCCAATGCCAACAGCTTCAACA 4823 Query 105545 GCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGA 105604 ||||||| | || |||||||| | |||||||| || || | || || ||| ||| Sbjct 4824 TCACAAATACTAGGAAATAATGAGAGTTTTGAACCTTATACATCAAATATTTATACAAGA 4883 Query 105605 AGAACCCTCGCGGGAGAGTTTGT 105627 ||| ||| || ||||| ||||| Sbjct 4884 AGAGTCCTTGCTGGAGAATTTGT 4906 >seq149 Length=23196 Score = 111 bits (122), Expect = 2e-19 Identities = 306/463 (66%), Gaps = 7/463 (2%) Strand=Plus/Minus Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || ||||| || | ||||| || | ||| || | | ||||||| |||| || ||| Sbjct 544 GATGACTCTATAGATGGTATTTACGAAACACTGAAGCAGTGTGCTTTAATCAGCAAATGG 485 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| ||||| || | | | || | | ||||| | || ||| || || Sbjct 484 GCTGGAGGTATAGGCTTAAGCGTTCACAACATAAGAGCAACATCTTCCTATATCCGTGGT 425 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || ||||| | ||| |||| | | || ||||| | || ||||| | ||||| || Sbjct 424 ACCAATGGAAACTCAAATGGCCTGGTACCTATGCTCAGAGTTTTTAATGATACAGCTCGT 365 Query 104576 TATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 |||||| |||||| ||| | |||| ||| | | || || ||||||||||| ||| Sbjct 364 TATGTAGATCAAGGTGGAGGGAAAAGAAAAGGAGCATTTGCTGTTTATCTTGAGCCTTGG 305 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 || || ||||| | || ||||| | | |||||||| || | || || | | Sbjct 304 CATGCTGATATTTTTGAATTCCTAAAACTAAAGCTCAACCATGGGAAAGAAGA-ACATAG 246 Query 104693 TGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 || | || || || | ||| || |||||||| ||||| || ||||| |||||||| || Sbjct 245 AGCTAGAGACCTTTTTTACGCCCTGTGGATTCCTGATCTTTTTATGAAAAGAGTTGAAGA 186 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 | ||| | ||| ||| | ||||| | ||| || | ||||| |||| | | Sbjct 185 AAATGGAGACTGGAGTCTTATGTGTCCTAATCAATGC-CAAGGTCTAAGTGATGTATTCG 127 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 |||| || |||||||| || || | ||| || || || |||| Sbjct 126 GTGAAGAATTTGAAGCTCTCTATATAAAATATGAACAACAAGG 84 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583241639882720